Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4435 143 6e-29 seq629 138 3e-27 seq1267 129 1e-24 seq1156 129 1e-24 seq5467 122 2e-22 >seq4435 Length=89394 Score = 143 bits (158), Expect = 6e-29 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| || ||||| | ||||| ||||||||||| |||||||| ||||| | | |||| Sbjct 36493 CTGAGCCTCAGGACTAAGTGAAGTGTAGACTCTTTCTGGATGTTATAATCTGACAGAGTT 36434 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||||||||||| ||| || || ||||| | |||||| ||||| | | |||||| Sbjct 36433 CTCCCATCTTCTAACTGTTTTCCTGCAAAGATTAACCTCTGTTGGTCTGGTGGAATTCCT 36374 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || || || |||||| ||| ||| | || | |||| ||| || ||||| Sbjct 36373 TCTTTATCCTGGATTTTTGCTTTCACATTTTCAATAGTGTC---ACTGGGTTCAACTTCG 36317 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| || ||||| || ||||||| |||||| Sbjct 36316 AGGGTTATAGTCTTGCCTGTAAGAGTTTTGACGAAGATCTGCAT 36273 Score = 100 bits (110), Expect = 7e-16 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || | ||||| || || ||||| || ||||||||||| | | ||||| Sbjct 36718 AGTCTCAGTACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAATCTGACAGGGTTCTT 36659 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | ||||| || || || | ||| || ||||| | | |||||| ||| Sbjct 36658 CCATCTTCCAATTGCTTCCCAGCAAAAATTAACCTTTGTTGGTCTGGAGGGATTCCCTCC 36599 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || |||||||| || ||| ||| | || | ||| | ||| ||||| ||||| Sbjct 36598 TTATCTTGAATCTTAGCTTTCACATTTTCGA--TTGTAT-CACTGGGTTCTACCTCAAGG 36542 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || |||||||| || || | |||||| Sbjct 36541 GTGATGGTTTTTCCTGTCAGAGTCTTAACAAAAATTTGCATT 36500 >seq629 Length=499154 Score = 138 bits (152), Expect = 3e-27 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||| | ||||||||| ||||| ||||||||||| | | || | Sbjct 6183 AGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGTTGTAATCTGAGAGTGTACGT 6124 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| ||||| ||| || || ||||| || ||||| ||||| | | ||| |||||| Sbjct 6123 CCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCCTTCC 6064 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || ||||| || ||| ||| ||| |||||| |||| ||| ||| ||||| | | Sbjct 6063 TTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTC---ACTTGGCTCCACTTCCAAA 6007 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || ||||| |||||||| || | ||||| Sbjct 6006 GTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || || | || ||||| || ||||| ||||||||||||||||| || | | || Sbjct 5959 CCTCAGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAAAGTGT 5900 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 || ||||| || || ||| || || ||||| || ||||| ||||| | | ||| || Sbjct 5899 TCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGTGGGATGCC 5840 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| ||||| || ||| ||| ||| |||||| |||| ||| ||| ||||| Sbjct 5839 TTCCTTGTCTTGGATCTTTGCTTTTACATTCTCTATTGTGTC---ACTTGGCTCCACTTC 5783 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||| || ||||| || ||||| |||||||| || | ||||| Sbjct 5782 CAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5738 >seq1267 Length=316221 Score = 129 bits (142), Expect = 1e-24 Identities = 166/226 (73%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| || || || | ||||| || ||||||||||| || |||||||| | ||||||| Sbjct 206209 CTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTT 206268 Query 151944 CTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || |||||||| | ||||| || || || || | |||||||||||| | | ||||| Sbjct 206269 CTTCCATCTTCCAACTGCTTT--CCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATTC 206326 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058 |||| || ||||| || || || ||| | || | |||| ||| || |||| Sbjct 206327 CTTCTTTGTCTTGGATCTTAGCCTTCACATTTTCAATTGTGTC---ACTGGGTTCAACTT 206383 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| |||||||| || || || ||||| |||| |||||| Sbjct 206384 CTAGGGTAATGGTTTTGCCGGTAAGGGTTTTCACAAAGATCTGCAT 206429 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | || |||||||||||||| |||||||| ||||| || || | || || | Sbjct 206439 GAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGACAATGTGCG 206498 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || | ||| || || || || | ||||| ||||| | | |||||||| Sbjct 206499 ACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGAATTCCTTC 206558 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||||||||| |||||| | || | | |||| | ||| ||||| ||||| Sbjct 206559 TTTGTCTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCACTTCCAGAGT 206618 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || || || || || |||| |||||| Sbjct 206619 GATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Score = 111 bits (122), Expect = 4e-19 Identities = 162/226 (72%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| || || || | ||||| || ||||||||||| || |||||||| | ||||||| Sbjct 205981 CTGAGCCTCAGCACTAAGTGAAGTGTTGACTCTTTTTGAATATTGTAATCAGATAAAGTT 206040 Query 151944 CTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || |||||||| | ||||| || || || || | ||| |||||||| | | ||| | Sbjct 206041 CTTCCATCTTCCAACTGCTTT--CCTGCAAAAATCAACCTTTGCTGGTCTGGAGGGATCC 206098 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTT 152058 | || || || || ||||| || || | || | |||| ||| || |||| Sbjct 206099 CCTCTTTATCCTGGATTTTAGCCTTTACGTTTTCAATAGTGTC---ACTTGGTTCAACTT 206155 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || |||||||| || || |||||||| || |||| |||||| Sbjct 206156 CCAGGGTGATAGTTTTACCTGTCAGAGTCTTAACAAAGATCTGCAT 206201 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || ||||| || || ||||| ||||| | || ||||| ||||| || || Sbjct 205771 TGGAGGGTCGACTCCTTCTGTATGTTATAATCTGACAAGGTTCTTCCATCCTCCAGTTGC 205830 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || | |||||||||||| | | ||| || || || || |||||||| Sbjct 205831 TTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGGGATCCCCTCTTTATCCTGAATTTTA 205890 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || ||| | || | |||| ||| || ||||| || || || ||||| || Sbjct 205891 GCCTTCACATTTTCAATAGTGTC---ACTTGGTTCAACTTCCAGGGTGATGGTTTTACCT 205947 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||| ||||| Sbjct 205948 GTCAGAGTCTTAACAAAGATTTGCAT 205973 >seq1156 Length=327524 Score = 129 bits (142), Expect = 1e-24 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||||||||| |||||||| || || |||||||| | || ||||| |||||| Sbjct 17703 AGAACAAGATGAAGAGTGGACTCTTTCTGAATATTGTAATCTGATAGTGTTCTTCCATCT 17644 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||||| ||||| || || || || | ||||| || || | | |||||||| || | Sbjct 17643 TCTAGCTGCTTT--CCTGCAAATATTAATCTCTGTTGATCAGGGGGAATTCCTTCTTTAT 17586 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| |||||| || ||| |||| | |||| | ||||||||| | ||||||| Sbjct 17585 CTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTAGGCTCTACTTCTAAGGTAATAG 17526 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || | || || || |||| ||||||||| Sbjct 17525 TCTTTCCTGTCAAGGTTTTTACAAAGATCTGCATTTT 17489 >seq5467 Length=66102 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||| || || |||||||| ||||| || | | || | ||||| Sbjct 29836 AGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTCAGAAAGGGTCCGTCCATCC 29895 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || || || |||||||| | | || ||||| || ||| Sbjct 29896 TCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGGTGGAATACCTTCTTTGTCT 29955 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||| ||| |||| | | || | |||||||| |||||||| ||| Sbjct 29956 TGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTTCTACTTCCAGAGTAATGGTT 30015 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || ||||| |||| |||||| Sbjct 30016 TTGCCAGTTAGGGTTTTCACAAAGATCTGCAT 30047 Score = 102 bits (112), Expect = 2e-16 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| ||||||||||| | |||||| ||||| || || || ||||| | | || | Sbjct 29602 AGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAGAAAGGGTCCGT 29661 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || ||| || || || || || ||||| ||||| | | || ||||| Sbjct 29662 CCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGAATGCCTTCT 29721 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || ||||| || ||| ||| ||| |||| | |||| ||| || || || | | Sbjct 29722 TTGTCTTGGATCTTTGCTTTTACATTCTCAATTGTGTC---ACTTGGTTCCACCTCCAAA 29778 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || ||||| ||||| || || | |||||| Sbjct 29779 GTGATAGTTTTTCCAGTGAGGGTCTTGACAAAAATCTGCAT 29819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149581044726103