Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq994 149 7e-31 seq3845 113 5e-20 seq5418 107 2e-18 seq6658 98.7 1e-15 >seq994 Length=361151 Score = 149 bits (164), Expect = 7e-31 Identities = 308/450 (68%), Gaps = 19/450 (4%) Strand=Plus/Minus Query 128490 CCAGGTAAAAGAAAATGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATCAATGGCA 128549 ||||| ||| || | ||| |||| | |||| ||||| || | ||||| |||||||| Sbjct 158595 CCAGGAAAACGACATTGGCTAAAAATTAAAAAAGATTACCTAGAAGATGGAGCAATGGCA 158536 Query 128550 GATTCTGCTGATTTAGTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATATGGAGGA 128609 ||||| |||||| | ||||| | || ||||||| ||| | || || | | || ||| Sbjct 158535 GATTCAGCTGATCTTGTTGTTCTTGGAGCATATTTTGGAACTGGAAATA---AAGGTGGA 158479 Query 128610 ATAAAATCTATATTTCTTATGGGATGTTATGATAAAGAAACAGATACATGGAAAACTGTT 128669 || | || |||||||| ||||||||||| ||| | | | | |||| |||||| Sbjct 158478 ATGATGTCAATATTTCTGATGGGATGTTACGATCCTGCTAGTAAAAAATGGTGTACTGTT 158419 Query 128670 ACAAAA-TGC--TCAGGGTTTAATGATGAAACATTAAAAGAATTACAATC---AATTGAT 128723 |||||| ||| ||| | |||||| || || || || | ||| | | || Sbjct 158418 ACAAAAGTGCATGGAGGACATGATGATGCTACTTTTGAAAAACTCCAAACTGAGCTGGAC 158359 Query 128724 ATGATTAAAATTAGTAAAAATAAAGATAAAATTCCAAATTGGTT---AATTATTAACAGT 128780 |||| |||||||| || | | |||| |||| |||| | | | | ||| | | Sbjct 158358 ATGAAAAAAATTAGGAAGGACCCAAGTAAAGTTCCTGCTTGGCTGAAAGTGAATAAAACT 158299 Query 128781 ATTCATTATCCGGATTTTATTATCAAAGATCCAAAATCATCTCCTGTTTGGGAAATAATT 128840 |||| ||| |||||| || || ||||| ||| || || || |||||||| || Sbjct 158298 -CTCAT--TCCTGATTTTGTTGCTAATGATCCTAAAAACTCCCCAGTATGGGAAATTGTT 158242 Query 128841 GGATATGAATTTACAAAATCACCATCTCATACAGCGAATGGAATATCAATTAGGTTTCCT 128900 ||| |||||||||||| || | |||||||| |||||||| || ||| | ||||| Sbjct 158241 GGAGCAGAATTTACAAAAGCAGAAATCCATACAGCCAATGGAATCTCTATTCGTTTTCCA 158182 Query 128901 AGA--TGCAAAAATATACGAAATGATAAAA 128928 ||| ||||||| || ||| |||| |||| Sbjct 158181 AGAGTTGCAAAA--ATCCGAGATGACAAAA 158154 >seq3845 Length=110360 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||||| || | ||||||| ||||| || || ||||| | |||| || ||| Sbjct 72983 TCATCTCTACTGATAAGTTCATTACTGAATGTCAAACCAGGCATCAGACCTCTCTTCTTA 72924 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||||| |||||||| || |||||||| || ||||| ||||| |||||||| Sbjct 72923 AGCCAGAATATTGATGCAAATGACCCAGAAAAGAATATGCCCTCCACAGCAGCAAAGGCT 72864 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 |||| || |||||| || || || || | ||||| || | ||||| || Sbjct 72863 ACAACTCGCTCACCAAAAGTAGCTGTAGGATGACCTATCCAGTTGAGAGCCCAATCTGCT 72804 Query 23713 TTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGA 23754 ||| || ||||| | ||||||||||| || || ||| Sbjct 72803 TTCTTCTTCACACAAGGCAAGGTTTCAATTGCATTGAAAAGA 72762 Score = 100 bits (110), Expect = 3e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 23773 TCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCA 23832 ||| | || ||||| ||||||| ||||| |||||||| ||||| | ||||||||| ||| Sbjct 72341 TCTCTGATGTATGTGTCAATTAACAAACTGTACATTTCTGAATGGACATTTTCAATGGCA 72282 Query 23833 ATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTT 23890 || || || ||||||||||| |||||||| | | |||||| || | |||||||| Sbjct 72281 ATTTGGAAACCATAAAAACACCTAGCTTCTGTTACTTGAACTTCCTGGCTAAATCTTT 72224 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23898 ATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATG 23957 |||||| |||||||| ||||||||||||||||||||||| || | | ||||| || Sbjct 71035 ATTTTCATTAACAATCCCATCACTAGCAGCAAAGAAAGCCAGGATGTGAGAAATAAAGTG 70976 Query 23958 TCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 24017 | |||||| | ||| || | ||| | | | ||||| || | ||||||||| || Sbjct 70975 TTGTTCATCTTCTTTTAAATTCTCCCACTGTATCAGGTCTTTGGACAGATCAACTTCTTC 70916 Query 24018 AACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTAT 24077 || ||||| || ||| || ||||||||| |||| || || | || || Sbjct 70915 TACAGTCCAGAATGAAGCCTCTGCTTTCTTATACATCTGCCAGATGTCTGGGTATTCAAT 70856 Query 24078 TGGAAATATTACGAATCT 24095 ||||| || || ||||| Sbjct 70855 GGGAAAAATAACAAATCT 70838 >seq5418 Length=65370 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23899 TTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGT 23958 ||||| ||||| || ||||||||||||||||||||||| | |||| ||||| ||| Sbjct 6919 TTTTCATTAACTATCCCATCACTAGCAGCAAAGAAAGCCAAGACATGAGAAATAAAGTGT 6860 Query 23959 CTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCA 24018 ||||| ||| | ||| | || ||| |||| | ||| || ||||| |||||||| || Sbjct 6859 CTTTCTTCATCTTTTAACTGTTCCCAGTCATATACATCCTTGGATAAGTCAACTTCTTCT 6800 Query 24019 ACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATT 24078 |||||||||| ||| || | ||| ||||| |||| || || | || || Sbjct 6799 GCTGTCCAAAATGAAGCCTCTGCCCTCTTGTACATCTGCCAGATGTCTGGGTATTCAATG 6740 Query 24079 GGAAATATTACGAATCT 24095 ||||| ||||| || || Sbjct 6739 GGAAACATTACAAACCT 6723 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || || || ||||||| |||||||||||||| || |||| ||||||||| ||||| || Sbjct 7515 ATGTAGGTGTCAATTAACAAACTATACATTTCTGAGTGAACATTTTCAATGGCAATTTGG 7456 Query 23839 AACCCATAAAAACATCTAGCTTC 23861 || ||||||||||| |||||||| Sbjct 7455 AAACCATAAAAACACCTAGCTTC 7433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || || |||| |||||| ||| || | || ||||| | || || ||||| Sbjct 8157 TCATCTCTGCTGATCAGCTCATTACTAAAAGTGAGACCAGGCATCAGGCCACGCTTTTTT 8098 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| || |||| |||||| || || || || || || || || ||||| ||||| ||| Sbjct 8097 AGCCAGAAAATTGAAGCAAAAGACCCAGAGAAAAATATTCCTTCTACAGCAGCAAAAGCC 8038 Query 23653 ACAAGACGTGTACCAAATGTTGC 23675 |||| || |||||||||||| Sbjct 8037 ACAACTCGCTCACCAAATGTTGC 8015 >seq6658 Length=47451 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 23908 ACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 23967 || || |||||||||||||||||||| || | || | |||||||| |||||||| ||| Sbjct 26440 ACTATTCCATCACTAGCAGCAAAGAAGGCCAACACGTGATTTATAAAGTGTCTTTCTTCA 26499 Query 23968 GTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAA 24027 | | ||| || |||||||| ||| ||||| || || || ||||| ||| | ||||| Sbjct 26500 GGTTTTAACTTGTTCCAATCTGGAATGTCTTTAGACAAGTCCACTTCTTCAGCAGTCCAG 26559 Query 24028 AAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATT 24087 || ||| || ||| ||||| ||||||||| | | ||||| || ||| Sbjct 26560 AAGGAAGCCTCTGCTTTCTTGTACATATCCCAAATATCTGGGTACTCAATTGGTAAAATT 26619 Query 24088 ACGAATC 24094 || |||| Sbjct 26620 ACAAATC 26626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519618511150200