Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq629 109 4e-19 seq5467 86.0 4e-12 seq4435 82.4 5e-11 seq1267 82.4 5e-11 >seq629 Length=499154 Score = 109 bits (120), Expect = 4e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || ||||| ||| ||||| || || || || |||||||||||||| Sbjct 5971 TTGCATCCCTCCCCTCAGCCTCGGAACCAGATGTAGGGTAGATTCTTTTTGGATGTTGTA 5912 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| || | || ||||| || || || |||||||||| | ||| || || Sbjct 5911 GTCAGAAAGTGTTCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAGTCTCTGTTGGTC 5852 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | |||||||| || ||||| ||||| | ||| |||| ||||| | Sbjct 5851 AGGTGGGATGCCTTCCTTGTCTTGGATCTT-TGCTTTTACATTCTCTATTGTGTCACTTG 5793 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| |||| || || || ||||| |||||||||||||| || ||||||||| || Sbjct 5792 GCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATGGTG 5734 Score = 109 bits (120), Expect = 4e-19 Identities = 170/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 44100 TTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGT 44159 || |||| || || || | |||||| || || || || | || ||||||||| |||| Sbjct 6202 TTAATTTGAT-CCACCACGCAGTCTTAAGACAAGATGCAAAGTAGACTCCTTTTGAATGT 6144 Query 44160 TGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 ||||||| | |||| || | || || || || || || |||||||||| | ||| | Sbjct 6143 TGTAATCTGAGAGTGTACGTCCATCCTCTAGTTGTTTACCAGCAAAGATCAGTCTCTGTT 6084 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCG 44278 | || | || | |||||||| || ||||| ||||| | ||| |||| ||||| Sbjct 6083 GGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTT-TGCTTTTACATTCTCTATTGTGTCA 6025 Query 44279 GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| |||| || || || ||||| |||||||||||||| || |||||||| Sbjct 6024 CTTGGCTCCACTTCCAAAGTGATGGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 5966 >seq5467 Length=66102 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| || || ||||| ||||| || ||||||||||| ||||| || Sbjct 29817 CATCCCTCCTCTCAATCGCAGAACCAGATGAAGAGTTGATTCCTTTTGGATATTGTAGTC 29876 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || ||||| || || || ||||| || | | ||||| |||| Sbjct 29877 AGAAAGGGTCCGTCCATCCTCCAGTTGTTTACCTGCAAAAATGAGTCTTTGCTGGTCTGG 29936 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| |||| | | | || ||||| | ||| | || || || | || Sbjct 29937 TGGAATACCTT-CTTTGTCTTGAATTTTTGCTTTTACATTCTCAATAGTATCACTAGGTT 29995 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || |||| ||||| || || || || ||||| ||||| ||||| |||||| || Sbjct 29996 CTACTTCCAGAGTAATGGTTTTGCCAGTTAGGGTTTTCACAAAGATCTGCATGGTG 30051 >seq4435 Length=89394 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||||||| ||||| || | || |||||| || || ||||| Sbjct 36050 TTGCATCCCACCACGAAGTCTCAGAACCAGATGTAAAGTAGACTCCTTCTGAATATTGTA 35991 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 ||| | | || | || | || |||| |||||| || |||||||| || | || |||| Sbjct 35990 ATCTGACAAGGTA-CGTCCATCTTCCAACTGCTTTCCAGCAAAGATTAATCTTTGTTGAT 35932 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | || | || ||||| || || || |||| | |||| ||||||||||| Sbjct 35931 CAGGTGGAATTCCCTCCTTATCTTGGATTTTA-GCTTTGACGTTCTCTATGGTGTCGCTA 35873 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||| || || ||||| || || || ||||| || || || ||||| Sbjct 35872 GGCTCTACCTCCAAAGTGATTGTCTTGCCTGTTAGCGTCTTTACAAATATCTGCAT 35817 >seq1267 Length=316221 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || || | || |||||| || | ||| || || |||||| || ||||| ||||| | | Sbjct 205747 CCACCACGCAATCTCAATACTAAGTGGAGGGTCGACTCCTTCTGTATGTTATAATCTGAC 205806 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | | | || ||||| ||||| || ||||| || || | |||||| |||| ||| Sbjct 205807 AAGGTTCTTC-CATCCTCCAGTTGCTTGCCAGCAAAAATTAACCTCTGCTGGTCTGGAGG 205865 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | || || || ||| || || ||||| || | || ||||| | ||| || Sbjct 205866 GATCCCCTCTTTATCCTGAATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGTTCAAC 205925 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || || || || || || ||||| || |||||||||||| Sbjct 205926 TTCCAGGGTGATGGTTTTACCTGTCAGAGTCTTAACAAAGATTTGCATG 205974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358732129267281