Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5467 154 4e-32 seq4435 152 1e-31 seq629 149 2e-30 seq1267 140 8e-28 seq1156 107 5e-18 >seq5467 Length=66102 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || ||||| |||||||| ||||| | ||||||||| ||| Sbjct 29816 CAGATTTTTGTCAAGACCCTCACTGGAAAAACTATCACTTTGGAGGTGGAACCAAGTGAC 29757 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||| || ||||||||||| || || || ||||| || Sbjct 29756 ACAATTGAGAATGTAAAAGCAAAGATCCAAGACAAAGAAGGCATTCCACCTGACCAACAG 29697 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || |||||||| || |||||| |||| ||| | |||||||| | Sbjct 29696 AGACTGATTTTTGCAGGTAAACAGCTGGAGGATGGACGGACCCTTTCTGATTATAATATT 29637 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||| || |||||||||| | ||||| Sbjct 29636 CAGAAAGAATCTACTTTGCATCTTGTCCTAAGACT 29602 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || ||||| || || || || || ||| || Sbjct 30044 CAGATCTTTGTGAAAACCCTAACTGGCAAAACCATTACTCTGGAAGTAGAACCTAGTGAT 29985 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||| ||||| ||||||||||| || || || ||||||||| Sbjct 29984 ACTATTGAGAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGACCAGCAA 29925 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || ||||| || || |||||| |||| ||| | || || || || Sbjct 29924 AGACTCATTTTTGCAGGTAAACAACTGGAGGATGGACGGACCCTTTCTGACTACAATATC 29865 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| |||||||| || ||||| ||| || || | ||| Sbjct 29864 CAAAAGGAATCAACTCTTCATCTGGTTCTGCGATTGAGA 29826 >seq4435 Length=89394 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| ||||| || || || |||||||| || ||| | ||| Sbjct 36276 CAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGTGAC 36335 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| || ||||| ||||||||||| || || ||||| || Sbjct 36336 ACTATTGAAAATGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGACCAACAG 36395 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||||||| | |||||||| || ||||| | ||||||||| || Sbjct 36396 AGGTTAATCTTTGCAGGAAAACAGTTAGAAGATGGGAGAACTCTGTCAGATTATAACATC 36455 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || ||||| || | || |||| |||||| Sbjct 36456 CAGAAAGAGTCTACACTTCACTTAGTCCTGAGGCTCAGA 36494 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| ||||||||||| |||||||| ||||| ||| | || Sbjct 36504 CAAATTTTTGTTAAGACTCTGACAGGAAAAACCATCACCCTTGAGGTAGAACCCAGTGAT 36563 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| |||||||| || || || ||||||||||| ||||| ||| Sbjct 36564 ACAATCGAAAATGTGAAAGCTAAGATTCAAGATAAGGAGGGAATCCCTCCAGACCAACAA 36623 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || || || || | ||||||||||| || || | ||||| ||| | Sbjct 36624 AGGTTAATTTTTGCTGGGAAGCAATTGGAAGATGGAAGAACCCTGTCAGATTACAACATT 36683 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||||||||||| || || | || ||||||| Sbjct 36684 CAGAAAGAATCAACCCTTCACTTGGTACTGAGACT 36718 Score = 111 bits (122), Expect = 4e-19 Identities = 167/232 (72%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 || ||||||||| | || || || || || || ||||| || || ||||| | |||| Sbjct 35809 AGATTAAAATGC---AGATATTTGTAAAGACGCTAACAGGCAAGACAATCACTTTGGAGG 35865 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 | || || || ||||||| |||||||||||| || || || || || || ||||| Sbjct 35866 TAGA--GCCTAGCGACACCATAGAGAACGTCAAAGCTAAAATCCAAGATAAGGAGGGAAT 35923 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || || || ||| || | ||||| || ||||| ||| | ||||||||| | || || Sbjct 35924 TCCACCTGATCAACAAAGATTAATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTAC-CT 35982 Query 178088 TG-CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || | ||||| || | || || || || || | ||||| ||| ||||||| Sbjct 35983 TGTCAGATTACAATATTCAGAAGGAGTCTACTTTACATCTGGTTCTGAGACT 36034 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| ||||| || || || |||||||| || ||| | || Sbjct 32658 CAGATCTTCGTCAAAACTCTTACAGGCAAGACTATAACCCTCGAAGTTGAACCCAGTGAT 32717 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| ||| || ||||| ||||||||||| || || || || ||| Sbjct 32718 ACTATTGAAAACGTGAAAGCAAAAATCCAGGATAAAGAAGGAATTCCACCAGATCAACAA 32777 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 || | || || || || ||||| | |||||||| | || | | |||||||| Sbjct 32778 AGATTGATTTTTGCAGGGAAACAATTAGAAGATGGGCGCACCTTATCAGATTATAA 32833 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || |||||||| || || || || || ||| | || Sbjct 36048 CAAATCTTTGTTAAAACACTTACTGGAAAAACAATTACTCTGGAAGTTGAACCCAGTGAT 36107 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || ||||||||||| || || || || ||| Sbjct 36108 ACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAACAA 36167 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||| | |||||||| | || | | |||||||| | Sbjct 36168 AGATTGATTTTTGCAGGGAAACAGTTGGAAGATGGTCGCACCTTATCAGATTATAATATT 36227 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || ||||| || |||| Sbjct 36228 CAGAAGGAGTCCACACTTCA-CTTG 36251 >seq629 Length=499154 Score = 149 bits (164), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 |||||||| ||||| || ||||| |||||||| ||||| | || ||||| || || Sbjct 5741 CAAATTTTTGTGAAGACCCTCACTGGAAAAACCATCACTTTGGAAGTGGA--GCCAAGTG 5798 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || ||| |||||| || ||||| ||||| ||||| || ||||| | Sbjct 5799 ACACAATAGAGAATGTAAAAGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAAC 5858 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| ||||| || || ||||| || || ||||| | || ||| | || || ||| Sbjct 5859 AGAGACTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGAACACTTTCTGACTACAACA 5918 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||||||||| || || ||||| ||| ||| || || Sbjct 5919 TCCAAAAAGAATCTACCCTACATCTGGTTCCGAGGCTGAG 5958 >seq1267 Length=316221 Score = 140 bits (154), Expect = 8e-28 Identities = 163/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || ||||||||||| ||||| || || ||||| || || Sbjct 206654 CAGATCTTTGTAAAAACGCTAACAGGAAAAACTATCACTCTGGAAGTGGA--GCCTAGTG 206597 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || ||||| || ||||| |||||||||||||| || || ||||| | Sbjct 206596 ACACCATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAAC 206537 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | || || || ||||||||| | || ||||| | || | | || |||||| Sbjct 206536 AGAGATTAATTTTTGCTGGAAAACAGTTGGAGGATGGTCGCACATTGTCAGACTATAACA 206477 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | ||||||||||| || || ||||| || ||||||||| Sbjct 206476 TTCAAAAAGAATCTACTCTTCATCTAGTGTTGAGACTC 206439 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || ||||| || ||||| || || ||| | ||| Sbjct 206426 CAGATCTTTGTGAAAACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAACCCAGTGAC 206367 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || |||||||||||||||||||| |||||||| Sbjct 206366 ACAATTGAAAATGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAGCAG 206307 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || ||||| ||| | ||||||||||| ||| | | ||||| || | Sbjct 206306 AGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAATATT 206247 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| |||||||| || | || |||| |||||| Sbjct 206246 CAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGA 206208 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| ||||| ||||| |||||||| || || ||| ||| Sbjct 206198 CAGATCTTTGTTAAGACTCTGACAGGTAAAACTATCACCCTGGAAGTTGAACCAAGTGAC 206139 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || || ||||| ||||| || |||||||| ||||||||| Sbjct 206138 ACTATTGAAAACGTAAAGGCTAAAATCCAGGATAAAGAGGGGATCCCTCCAGACCAGCAA 206079 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || || ||||| ||| | ||||||||||| ||| | | ||||| || | Sbjct 206078 AGGTTGATTTTTGCAGGAAAGCAGTTGGAAGATGGAAGAACTTTATCTGATTACAATATT 206019 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| |||||||| || | || |||| |||||| Sbjct 206018 CAAAAAGAGTCAACACTTCACTTAGTGCTGAGGCTCAGA 205980 >seq1156 Length=327524 Score = 107 bits (118), Expect = 5e-18 Identities = 156/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || || ||||| | |||||||| || || ||| | || || || Sbjct 17489 AAAATGC---AGATCTTTGTAAAAACCTTGACAGGAAAGACTATTACCTTAGAAGTAGA- 17544 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || || |||| || ||||| || || ||| || || || ||||||||||| || | Sbjct 17545 -GCCTAGTGACACTATTGAGAATGTAAAGGCAAAAATCCAAGATAAAGAAGGAATTCCCC 17603 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || || || || | || || || ||||| ||||| ||||||||||| || || | | Sbjct 17604 CTGATCAACAGAGATTAATATTTGCAGGAAAGCAGCTAGAAGATGGAAGAACACTATCAG 17663 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || | || ||||| || || || ||||||||| Sbjct 17664 ATTACAATATTCAGAAAGAGTCCACTCTTCATCTTGTT 17701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199308047198842