Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5467 98.7 9e-16 seq4435 91.5 1e-13 seq1267 91.5 1e-13 >seq5467 Length=66102 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || | || || ||||||| || || |||||||| ||||| || || Sbjct 29593 CCACCACGCAGTCTTAGGACAAGATGCAAAGTAGATTCTTTCTGAATATTATAATCAGAA 29652 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||| || || || || ||||| | ||||||||| | ||| Sbjct 29653 AGGGTCCGTCCATCCTCCAGCTGTTTACCTGCAAAAATCAGTCTCTGTTGGTCAGGTGGA 29712 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCAC 41814 | || || ||||| ||| ||| |||| || || ||||| || | ||||| Sbjct 29713 ATGCCTTCTTTGTCTTGGATCTTT-GCTTTTACATTCTCAATTGTGTCACTTGGTTCCAC 29771 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || ||||| || || || ||||| || ||||||||||| Sbjct 29772 CTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTGACAAAAATCTGCAT 29819 >seq4435 Length=89394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||| | || |||||||||||| || || || || | ||| || | || || Sbjct 36025 ACCAGATGTAAAGTAGACTCCTTCTGAATATTGTAATCTGACAAGGTACGTCCATCTTCC 35966 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||| || || || || | | ||||| || | |||| | |||||| || | Sbjct 35965 AACTGCTTTCCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATTCCCTCCTTATCTTGG 35906 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||||| |||| ||| | | |||||||| | ||| ||||||| || || || || Sbjct 35905 ATTTTA-GCTTTGACGTTCTCTATGGTGTCGCTAGGCTCTACCTCCAAAGTGATTGTCTT 35847 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866 || || ||||||||||| || |||||||| ||| Sbjct 35846 GCCTGTTAGCGTCTTTACAAATATCTGCATTTTA 35813 >seq1267 Length=316221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | ||||| ||||| || || || || |||||||||||||| || Sbjct 206430 GCCCCCACGGAGTCTCAACACTAGATGAAGAGTAGATTCTTTTTGAATGTTATAGTCTGA 206489 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || | ||| || || || || || | | ||||||||| | ||| Sbjct 206490 CAATGTGCGACCATCCTCCAACTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGG 206549 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | || |||| | ||| |||| || | || | | ||||| || | ||||| Sbjct 206550 AATTCCTTCTTTGT-CTTGAATTTTGGCCTTGACATTTTCAATGGTGTCACTAGGCTCCA 206608 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || ||||| || || ||||| ||||| || |||||||| Sbjct 206609 CTTCCAGAGTGATAGTTTTTCCTGTTAGCGTTTTTACAAAGATCTGCAT 206657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460646680611600