Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq2981 86.0 5e-12 >seq2981 Length=868677 Score = 86.0 bits (94), Expect = 5e-12 Identities = 176/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 18872 AGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAAC-CCAGAAAGCCGAC 18930 |||||| |||||| | || ||||| | | || | ||||| | || || | ||| Sbjct 860243 AGGAATAGATCAGTTAAAAGAAGTTATTCACA-AAGTGAAACATTCTCCTGATGACAGAC 860185 Query 18931 GAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTC 18990 | || || || || |||||||||||| || ||||| ||||| | | |||||||| | Sbjct 860184 GTATTATAATGTCTGCTTGGAATCCAACTGACATCCCAGAAATGGCATTGCCTCCATGCC 860125 Query 18991 ACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGAT 19050 || | ||| || ||||| || || || ||||||||| || | ||||||||| Sbjct 860124 ACGCCTTAGTCCAATTTTATGTGAGCAATGGAGAATTATCCGCACAGCTTTACCAGAGAA 860065 Query 19051 CGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACA 19110 | |||||||| | ||||| ||||| || || || ||| || | || || | || Sbjct 860064 GTGCAGATATGGGTTTAGGGGTGCCGTTTAATATAGCATCGTATTCATTACTGACTTGCA 860005 Query 19111 TAGTAGCGCATGTTACAGG 19129 | | || |||||||| || Sbjct 860004 TGATCGCTCATGTTACTGG 859986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399489247066350