Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq2981 86.0 5e-12
>seq2981
Length=868677
Score = 86.0 bits (94), Expect = 5e-12
Identities = 176/259 (68%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 18872 AGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAAC-CCAGAAAGCCGAC 18930
|||||| |||||| | || ||||| | | || | ||||| | || || | |||
Sbjct 860243 AGGAATAGATCAGTTAAAAGAAGTTATTCACA-AAGTGAAACATTCTCCTGATGACAGAC 860185
Query 18931 GAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTC 18990
| || || || || |||||||||||| || ||||| ||||| | | |||||||| |
Sbjct 860184 GTATTATAATGTCTGCTTGGAATCCAACTGACATCCCAGAAATGGCATTGCCTCCATGCC 860125
Query 18991 ACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGAT 19050
|| | ||| || ||||| || || || ||||||||| || | |||||||||
Sbjct 860124 ACGCCTTAGTCCAATTTTATGTGAGCAATGGAGAATTATCCGCACAGCTTTACCAGAGAA 860065
Query 19051 CGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACA 19110
| |||||||| | ||||| ||||| || || || ||| || | || || | ||
Sbjct 860064 GTGCAGATATGGGTTTAGGGGTGCCGTTTAATATAGCATCGTATTCATTACTGACTTGCA 860005
Query 19111 TAGTAGCGCATGTTACAGG 19129
| | || |||||||| ||
Sbjct 860004 TGATCGCTCATGTTACTGG 859986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399489247066350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |