Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2981 113 3e-20 >seq2981 Length=868677 Score = 113 bits (124), Expect = 3e-20 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 102044 GCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCA 102103 || || || || ||||| ||||||||||| |||||||| | ||| ||||| ||||| ||| Sbjct 860383 GCACCAAAGTGTCTCCATTGAAATCCATAAACAGGTCCTAAATCACCTTCCTCTCTATCA 860442 Query 102104 TAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCC- 102162 || ||| |||||||| | | || ||||| ||||||| || || || || Sbjct 860443 GTGAAGCCACAAGAGTCTAAAAAAGCCCGTGAACCATTTCCATCCCAGATATGAACACCT 860502 Query 102163 --AGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCA 102220 | ||||| || |||||| | || |||||||| |||||||| || | ||||||| Sbjct 860503 TTATCTGCTAAT---TCTTTGGAATTTGTCGATCCTCTAATAAACCATAATAATTCTTCA 860559 Query 102221 ACAACACCTCTCCAAAATACTCTCTTAGTAGT 102252 || || ||| ||| || ||||| ||||| || Sbjct 860560 ACTACTGCTCGCCAGAACACTCTTTTAGTGGT 860591 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| |||||||| ||||||||||| | | ||||| || || ||||| ||||| || Sbjct 859988 AGTAACATGAGCGATCATGCAAGTCAGTAATGAATACGATGCTATATTAAACGGCACCCC 860047 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 ||| |||||||| || ||| || || || || ||| | | ||||| | ||||| Sbjct 860048 TAAACCCATATCTGCACTTCTCTGGTAAAGCTGTGCGGATAATTCTCCATTGCTCACATA 860107 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCA 101931 |||||| ||| | || || || ||||| |||||| || ||||| | |||||| Sbjct 860108 AAATTGGACTAAGGCGTGGCATGGAGGCAATGCCATTTCTGGGATGTCAGTTGGATTCCA 860167 Query 101932 AGCACACATTAACATCCTTCTATC 101955 |||| |||||| || | ||| || Sbjct 860168 AGCAGACATTATAATACGTCTGTC 860191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361237859670530