Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3007 118 1e-21 seq2841 84.2 3e-11 >seq3007 Length=2871884 Score = 118 bits (130), Expect = 1e-21 Identities = 192/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 54397 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 ||| || || ||||| || ||| | || | || |||||||| || || ||||| || Sbjct 1589961 AAATCACCTGGACATCTGTTGATTGTTGGTGCAGGCGTTAAATAACGTCGGTGAAGCATG 1589902 Query 54457 CGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 |||||| || ||| || || ||| || || || || |||||| || || || || Sbjct 1589901 CGTAAAGTATCGTTCGGATAAATAG-TTATATGTTTCTATAGCTTTCTCAATGTCGTTTT 1589843 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 |||||| || || || || | ||| |||||||| || |||||||| || ||| || | Sbjct 1589842 CATGAATGCCAACAGCCACTCTCATCAACATGTGTTGTGGTCTTTCCACTATCGTGCCAT 1589783 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | ||||||| | ||| |||||| ||||||||||||| ||| || || |||| Sbjct 1589782 TAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAACCAATATAATTATAATTGAAGT 1589723 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATC 54669 ||| || || || ||| | |||| ||||| || Sbjct 1589722 CTCTGTCATATATTATAGCAGAGTCCAGTTTTTC 1589689 >seq2841 Length=357093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| | |||||||| || || || | ||| |||| ||| |||||||| |||| || Sbjct 189329 CACTAAAAACCTTTTTTGTCTCCTTATGCAAATTGGATATGGCAATTCTAGCTGCTAAAA 189388 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCT-GCTATTTCGGCTGTCAGAGTGTCC 54886 | ||||||| |||||||| | || || || | || ||| || | || | ||| Sbjct 189389 TTTCATAATCTGGATGTTGACT-GTTCATATGCATTGCAGTTTTAGCCGCCAAGTTATCC 189447 Query 54887 AATTCTACCGTTGTTACTCCATTATATA 54914 ||||| || |||||||||||| ||||| Sbjct 189448 AATTCAACTGTTGTTACTCCAGAATATA 189475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593699112794400