Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 159 5e-34
seq2981 152 8e-32
seq1957 123 4e-23
seq2987 122 1e-22
>seq3008
Length=1134530
Score = 159 bits (176), Expect = 5e-34
Identities = 165/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 124533 AATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA 124592
|| |||||||| || ||| | |||||| | || || |||||||||||| | || |||||
Sbjct 388774 AACACAATGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAA 388715
Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652
|| |||||| ||| ||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 388714 GCTTCTGATACTATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCC 388655
Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712
||||| || | | |||||||| |||||||| | || ||| |||| || || |||
Sbjct 388654 GATCAGCAGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGAT 388595
Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|| || || || || ||||| |||||||||||||||
Sbjct 388594 TACAACATCCAGAAGGAATCTACTTTGCATTTGGTT 388559
Score = 141 bits (156), Expect = 1e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | || || |||||||| ||||| || || |||| |||| |||
Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| || ||| | ||| ||||||||||| |||||||| || || || |||||
Sbjct 387566 AGATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCA 387507
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | | || ||||| ||||||||| | || ||| ||||||| | ||||| ||
Sbjct 387506 GCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAA 387447
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||||||||| ||| ||||||||||||| | | || ||||||||
Sbjct 387446 CATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCTTCGCGGTGGTAT 387396
Score = 132 bits (146), Expect = 7e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | || || | ||||| || || ||||| | || ||||||||
Sbjct 388541 AATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATC 388482
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
|| ||||| ||| |||| || ||||||||||| |||||||| || || || ||||
Sbjct 388481 AGACACAATCGAGAATGTTAAGGCA-AAAATTCAAGACAAAGAAGGCATCCCTCCGGATC 388423
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || || | |||||||| ||||||||| | || ||| |||| || || ||||| |
Sbjct 388422 AGCAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACA 388363
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||| || || ||||| ||||||||||||||| | | | || ||||||||
Sbjct 388362 ATATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGCGGTGGTAT 388311
Score = 127 bits (140), Expect = 3e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || || || || || ||||| || || | || | || | |
Sbjct 387853 ATGCAGATTTTCGTTAAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCT 387794
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| ||||| || |||||||||||||| ||||| |||||||||||
Sbjct 387793 GATACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAG 387734
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | | |||||||| ||||| ||| | || || | || || || |||||||||
Sbjct 387733 CAGCGTTTGATTTTTGCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATAAT 387674
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| ||||| ||||||||| |||||||| | | || ||||| ||
Sbjct 387673 ATCCAAAAGGAATCCACTTTGCATCTGGTTTTAAGGCTTCGCGGTGGAAT 387624
Score = 127 bits (140), Expect = 3e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | || || || ||||| ||||| || ||| |||| | || |||
Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| ||||| || | || |||||||| || || ||||| || || || ||||||
Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | | || ||||| ||||||||| | || ||| ||||||| | |||||| |||
Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|||||||||||||| ||| | ||||| ||||| | | || ||||||
Sbjct 387904 ATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAGGCTTCGCGGTGGT 387857
Score = 122 bits (134), Expect = 1e-22
Identities = 172/239 (72%), Gaps = 2/239 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || || |||||||| || || || || |||| | ||||||
Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| || |||| || ||||||||||| ||||| || || || || |||||
Sbjct 388252 GATACAATTGAGAACGTTAAGGCA-AAAATTCAAGACAAAGAGGGCATCCCTCCGGATCA 388194
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | | || ||||| |||||||| | || || | || ||| | ||||| ||
Sbjct 388193 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAA 388134
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||| |||||||| ||| ||||||| |||||||| | || || ||||| ||| ||
Sbjct 388133 TATTCAGAAAGAATCTACTCTGCATTTAGTTTTACGGCTTCGCGGAGGTATGCAAATTT 388075
Score = 113 bits (124), Expect = 7e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || || ||||||| || || || || | || | || || |
Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| || | || || |||||||||||||| || || || |||||||||
Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAA 387278
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| || ||||||||||| || ||| | |||||| | || || ||| ||| || |||
Sbjct 387277 CAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAAT 387218
Query 124719 ATTCAAAAAGAATCAAC 124735
|||||||| ||||| ||
Sbjct 387217 ATTCAAAAGGAATCTAC 387201
>seq2981
Length=868677
Score = 152 bits (168), Expect = 8e-32
Identities = 192/261 (74%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 205699 CCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGA 205758
||||| | ||||||| ||| | |||||| ||| || |||||||| || | |||||||
Sbjct 860344 CCTTGTCTAGTATAATCTGTGTGCATATCCTGATACTTGGCACCAAAGTGTCTCCATTGA 860403
Query 205759 AAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttata 205818
|| |||||||| || |||||||||||||| | ||||||| | || |||| | || |
Sbjct 860404 AATCCATAAACAGGTCCTAAATCACCTTCCTCTCTATCAGTGAAGCCACAAGAGTCTAAA 860463
Query 205819 tattttaatgatccattttcatcccaaatatggattcctttattttttaGAATATTT-GT 205877
| ||| |||||| ||||||| ||||| | ||||||| | || | | ||| |
Sbjct 860464 AAAGCCCGTGAACCATTTCCATCCCAGATATGAACACCTTTATCTGCTA-ATTCTTTGGA 860522
Query 205878 ATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGA 205937
||| || ||||| ||||||||||||||||||||||| | | ||| ||| |||| |
Sbjct 860523 ATTTGTCGATCCTCTAATAAACCATAATAATTCTTCAACTACTGCTCGCCAGAACACTCT 860582
Query 205938 TTTTGTTGTAAATAATGGAAA 205958
||| || || | |||||| ||
Sbjct 860583 TTTAGTGGTCAGTAATGGGAA 860603
>seq1957
Length=1295
Score = 123 bits (136), Expect = 4e-23
Identities = 101/123 (82%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 52688 TGTAGAAATTCCTTCAAATGATACTAATGGTTCATATAATAATACTTTACCATTAGAATT 52747
||| || |||||||| | ||| ||||||||||||| ||| |||||| || || ||
Sbjct 15 TGTGGATATTCCTTCGTAACTTACGAATGGTTCATATATTAAACATTTACCTTTTGACTT 74
Query 52748 TAATATAATTTTACATGCTTCTATATATTTACATGAATATTGTTTTATTTTATCAAATAT 52807
|||||||| | ||||||||||||| |||||||||||||||||||||| ||||| ||| |
Sbjct 75 TAATATAAGTCTACATGCTTCTATGTATTTACATGAATATTGTTTTAGTTTATGAAAATT 134
Query 52808 TTC 52810
|||
Sbjct 135 TTC 137
>seq2987
Length=818656
Score = 122 bits (134), Expect = 1e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | ||||| || || || |||||||| || | ||| | ||||| |
Sbjct 733114 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCT 733173
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||| || || ||||||||||| || || || ||||||||
Sbjct 733174 GACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCAG 733233
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || || || || || |||||||| || || | |||| | |||||||||
Sbjct 733234 CAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTATAAC 733293
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| ||||| || | ||||||||||| ||| | ||||| || ||
Sbjct 733294 ATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGGAAT 733343
Score = 114 bits (126), Expect = 2e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| ||||||| || || ||||| || || || | || | |||||
Sbjct 733341 AATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTC 733400
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || || ||| ||||| ||||| || || ||||||||||| || ||||||||
Sbjct 733401 TGACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733460
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | || ||||| || || |||||| | || ||| | |||| | ||| |||||
Sbjct 733461 GCAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAA 733520
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| ||||| || | || |||| | ||| | ||||| || ||
Sbjct 733521 CATTCAAAAGGAATCCACACTTCACCTGGTACTGCGTCTTCGAGGAGGAAT 733571
Score = 107 bits (118), Expect = 3e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | || ||||| ||||||||||| || || | || | |||||
Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || || || ||||| ||||| || || ||||||||||| || ||||||||
Sbjct 733629 CGACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733688
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | || ||||| || || |||||| | || ||| | |||| | || |||||
Sbjct 733689 GCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAA 733748
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|||||||| ||||| || | || |||||||| || | || || |||
Sbjct 733749 CATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCGACTTCGGGGAGGT 733797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755427387104000
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