Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3008 159 5e-34 seq2981 152 8e-32 seq1957 123 4e-23 seq2987 122 1e-22 >seq3008 Length=1134530 Score = 159 bits (176), Expect = 5e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 124533 AATACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA 124592 || |||||||| || ||| | |||||| | || || |||||||||||| | || ||||| Sbjct 388774 AACACAATGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAA 388715 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || |||||| ||| ||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 388714 GCTTCTGATACTATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCC 388655 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 ||||| || | | |||||||| |||||||| | || ||| |||| || || ||| Sbjct 388654 GATCAGCAGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGAT 388595 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || || || || || ||||| ||||||||||||||| Sbjct 388594 TACAACATCCAGAAGGAATCTACTTTGCATTTGGTT 388559 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || |||||||| ||||| || || |||| |||| ||| Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | ||| ||||||||||| |||||||| || || || ||||| Sbjct 387566 AGATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCA 387507 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || ||||| ||||||||| | || ||| ||||||| | ||||| || Sbjct 387506 GCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAA 387447 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| ||| ||||||||||||| | | || |||||||| Sbjct 387446 CATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCTTCGCGGTGGTAT 387396 Score = 132 bits (146), Expect = 7e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || | ||||| || || ||||| | || |||||||| Sbjct 388541 AATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATC 388482 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || ||||| ||| |||| || ||||||||||| |||||||| || || || |||| Sbjct 388481 AGACACAATCGAGAATGTTAAGGCA-AAAATTCAAGACAAAGAAGGCATCCCTCCGGATC 388423 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | |||||||| ||||||||| | || ||| |||| || || ||||| | Sbjct 388422 AGCAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACA 388363 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| || || ||||| ||||||||||||||| | | | || |||||||| Sbjct 388362 ATATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGCGGTGGTAT 388311 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || || || ||||| || || | || | || | | Sbjct 387853 ATGCAGATTTTCGTTAAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCT 387794 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| ||||| || |||||||||||||| ||||| ||||||||||| Sbjct 387793 GATACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAG 387734 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | |||||||| ||||| ||| | || || | || || || ||||||||| Sbjct 387733 CAGCGTTTGATTTTTGCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATAAT 387674 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||||||||| |||||||| | | || ||||| || Sbjct 387673 ATCCAAAAGGAATCCACTTTGCATCTGGTTTTAAGGCTTCGCGGTGGAAT 387624 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || ||||| ||||| || ||| |||| | || ||| Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || |||||||| || || ||||| || || || |||||| Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| ||||||||| | || ||| ||||||| | |||||| ||| Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||||||| ||| | ||||| ||||| | | || |||||| Sbjct 387904 ATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAGGCTTCGCGGTGGT 387857 Score = 122 bits (134), Expect = 1e-22 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || |||||||| || || || || |||| | |||||| Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| || |||| || ||||||||||| ||||| || || || || ||||| Sbjct 388252 GATACAATTGAGAACGTTAAGGCA-AAAATTCAAGACAAAGAGGGCATCCCTCCGGATCA 388194 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || ||||| |||||||| | || || | || ||| | ||||| || Sbjct 388193 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAA 388134 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| ||| ||||||| |||||||| | || || ||||| ||| || Sbjct 388133 TATTCAGAAAGAATCTACTCTGCATTTAGTTTTACGGCTTCGCGGAGGTATGCAAATTT 388075 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||||| || || || || | || | || || | Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || || |||||||||||||| || || || ||||||||| Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAA 387278 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||||||||| || ||| | |||||| | || || ||| ||| || ||| Sbjct 387277 CAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAAT 387218 Query 124719 ATTCAAAAAGAATCAAC 124735 |||||||| ||||| || Sbjct 387217 ATTCAAAAGGAATCTAC 387201 >seq2981 Length=868677 Score = 152 bits (168), Expect = 8e-32 Identities = 192/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 205699 CCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGA 205758 ||||| | ||||||| ||| | |||||| ||| || |||||||| || | ||||||| Sbjct 860344 CCTTGTCTAGTATAATCTGTGTGCATATCCTGATACTTGGCACCAAAGTGTCTCCATTGA 860403 Query 205759 AAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttata 205818 || |||||||| || |||||||||||||| | ||||||| | || |||| | || | Sbjct 860404 AATCCATAAACAGGTCCTAAATCACCTTCCTCTCTATCAGTGAAGCCACAAGAGTCTAAA 860463 Query 205819 tattttaatgatccattttcatcccaaatatggattcctttattttttaGAATATTT-GT 205877 | ||| |||||| ||||||| ||||| | ||||||| | || | | ||| | Sbjct 860464 AAAGCCCGTGAACCATTTCCATCCCAGATATGAACACCTTTATCTGCTA-ATTCTTTGGA 860522 Query 205878 ATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGA 205937 ||| || ||||| ||||||||||||||||||||||| | | ||| ||| |||| | Sbjct 860523 ATTTGTCGATCCTCTAATAAACCATAATAATTCTTCAACTACTGCTCGCCAGAACACTCT 860582 Query 205938 TTTTGTTGTAAATAATGGAAA 205958 ||| || || | |||||| || Sbjct 860583 TTTAGTGGTCAGTAATGGGAA 860603 >seq1957 Length=1295 Score = 123 bits (136), Expect = 4e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 52688 TGTAGAAATTCCTTCAAATGATACTAATGGTTCATATAATAATACTTTACCATTAGAATT 52747 ||| || |||||||| | ||| ||||||||||||| ||| |||||| || || || Sbjct 15 TGTGGATATTCCTTCGTAACTTACGAATGGTTCATATATTAAACATTTACCTTTTGACTT 74 Query 52748 TAATATAATTTTACATGCTTCTATATATTTACATGAATATTGTTTTATTTTATCAAATAT 52807 |||||||| | ||||||||||||| |||||||||||||||||||||| ||||| ||| | Sbjct 75 TAATATAAGTCTACATGCTTCTATGTATTTACATGAATATTGTTTTAGTTTATGAAAATT 134 Query 52808 TTC 52810 ||| Sbjct 135 TTC 137 >seq2987 Length=818656 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || |||||||| || | ||| | ||||| | Sbjct 733114 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCT 733173 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || || ||||||||||| || || || |||||||| Sbjct 733174 GACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCAG 733233 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || |||||||| || || | |||| | ||||||||| Sbjct 733234 CAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTATAAC 733293 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || | ||||||||||| ||| | ||||| || || Sbjct 733294 ATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGGAAT 733343 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| ||||||| || || ||||| || || || | || | ||||| Sbjct 733341 AATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTC 733400 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| ||||| ||||| || || ||||||||||| || |||||||| Sbjct 733401 TGACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733460 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || ||||| || || |||||| | || ||| | |||| | ||| ||||| Sbjct 733461 GCAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAA 733520 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | || |||| | ||| | ||||| || || Sbjct 733521 CATTCAAAAGGAATCCACACTTCACCTGGTACTGCGTCTTCGAGGAGGAAT 733571 Score = 107 bits (118), Expect = 3e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || ||||| ||||||||||| || || | || | ||||| Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || ||||| ||||| || || ||||||||||| || |||||||| Sbjct 733629 CGACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733688 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || ||||| || || |||||| | || ||| | |||| | || ||||| Sbjct 733689 GCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAA 733748 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| ||||| || | || |||||||| || | || || ||| Sbjct 733749 CATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCGACTTCGGGGAGGT 733797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755427387104000