Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq2987 116 4e-21
seq2394 107 2e-18
seq2680 105 8e-18
seq2907 104 3e-17
seq2756 104 3e-17
seq2927 98.7 1e-15
seq2760 96.9 4e-15
seq2978 95.1 1e-14
seq2891 95.1 1e-14
seq3008 89.7 6e-13
>seq2987
Length=818656
Score = 116 bits (128), Expect = 4e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
|||||||| | ||||| |||| || | |||| ||||||||||| || || || |
Sbjct 733569 TCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGA 733510
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
||||| | | || || || || || || ||||| || || |||||||| || | ||
Sbjct 733509 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGG 733450
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| | || |||||| |||||| ||| | | | | |||||| | ||| ||
Sbjct 733449 AATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGAC 733390
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|||| ||||||||| |||||||| || |||||||||||||||||||||
Sbjct 733389 TTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
|||||||| | |||||| |||||||| | |||| |||||||| || || ||||| |
Sbjct 733341 TCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGA 733282
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
||||| | |||| || | || ||||||||||| || || |||||||| || | ||
Sbjct 733281 AAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGG 733222
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| || ||| || || ||| || ||||| | | | ||||| | ||||||
Sbjct 733221 AATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCAC 733162
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | ||||| ||||| || || || ||||| ||||||||||||||
Sbjct 733161 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
||||| ||||| || | ||| ||||||||||| || || || | ||||| | |
Sbjct 733784 CGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCA 733725
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || || || || || ||||| || || || ||||| || | || | | || |||
Sbjct 733724 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTG 733665
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| |||||| ||| | | | | ||||||| | ||| || |||| ||||||
Sbjct 733664 TCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATG 733605
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|||||||| || || || || || ||||| ||||||
Sbjct 733604 GTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569
>seq2394
Length=137848
Score = 107 bits (118), Expect = 2e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 82051 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 81992
Query 60126 TACTACCGAGGATT 60139
||||||||||||||
Sbjct 81991 TACTACCGAGGATT 81978
>seq2680
Length=870558
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 645599 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 645658
Query 60126 TACTACCGAGGAT 60138
|||||||||||||
Sbjct 645659 TACTACCGAGGAT 645671
>seq2907
Length=4756786
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 3610872 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3610931
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 3610932 TACTACCGAGGA 3610943
>seq2756
Length=976025
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 647631 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 647572
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 647571 TACTACCGAGGA 647560
>seq2927
Length=4912583
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 3418023 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 3417964
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 3417963 TATACTATCGAGGA 3417950
>seq2760
Length=1610929
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1193719 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1193778
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 1193779 ATACTATCGAGGA 1193791
>seq2978
Length=2372211
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 2010920 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2010979
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 2010980 TACTATCGAGGA 2010991
>seq2891
Length=1507150
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1203026 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1203085
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1203086 TACTATCGAGGA 1203097
>seq3008
Length=1134530
Score = 89.7 bits (98), Expect = 6e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 42972 AACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCA 43031
|| |||| |||||| ||| |||||||| ||||| ||||||| || ||| ||| ||||
Sbjct 387642 AAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCT 387701
Query 43032 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091
|| || ||||| ||||| || || | |||||||| || | || | | ||| || ||
Sbjct 387702 TCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCT 387761
Query 43092 ATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150
||| | || | ||| | || | | || || || || || || | |||||||||
Sbjct 387762 -TGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGT 387820
Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| || || || || || || || || |||||
Sbjct 387821 TTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571795942408400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |