Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 127 3e-24
seq2987 116 6e-21
seq2838 105 1e-17
seq1957 84.2 3e-11
>seq3008
Length=1134530
Score = 127 bits (140), Expect = 3e-24
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || || |||||||| | ||| |||||||| || || ||||| ||
Sbjct 387399 CCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAG 387458
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| |||| | ||| || | ||||||||||||||| ||||| | ||||||||||||||
Sbjct 387459 AGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGG 387518
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
||||||||||| ||||| ||||||||| || |||
Sbjct 387519 ATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACT 387578
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
|||| ||||| ||||| ||||||| ||||| | ||| || ||||||
Sbjct 387579 TCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626
Score = 125 bits (138), Expect = 1e-23
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||||| | |||||||| ||||||||||| || ||||| ||||| ||
Sbjct 388314 CCACCGCGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGAC 388373
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||| | | ||| || | |||||||||||||||||||||||| ||||||||||||||
Sbjct 388374 AAAGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGG 388433
Query 146171 ATTCCTTCTTTATCTTG 146187
|| |||||||| |||||
Sbjct 388434 ATGCCTTCTTTGTCTTG 388450
Score = 114 bits (126), Expect = 2e-20
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||| | ||| ||||| |||| ||| ||||| ||||| || ||||||||||| |
Sbjct 387625 TTCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAG 387684
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| | ||| | | || || | ||| ||||||||||||||||| | |||||||| || |
Sbjct 387685 ACAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTG 387744
Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228
| || || ||||||||||| |||||| ||| || |
Sbjct 387745 GGATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGA 387804
Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||| || ||||| |||||||| || | ||||||| ||| || |||||
Sbjct 387805 CTTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 105 bits (116), Expect = 1e-17
Identities = 168/248 (68%), Gaps = 1/248 (0%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||| | ||||| | |||||||| ||||||||||| || || || ||||| |
Sbjct 388540 TTCCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGG 388599
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| | ||| | | ||| || | |||||||| ||||||||||| | |||||||| || |
Sbjct 388600 ACAAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTG 388659
Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228
|||| || ||||||||||| |||||| ||| ||| |
Sbjct 388660 GAATACCCTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAA 388719
Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT-AGAA 146287
|||| || || || ||||| || || ||||| || | || || |||||| | || | |
Sbjct 388720 CTTCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCATTGTGTTCTGTA 388779
Query 146288 AAATATTT 146295
|||| |||
Sbjct 388780 AAATTTTT 388787
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || || || ||||| | ||| |||||||| ||||| ||||||||
Sbjct 387858 CCACCGCGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAG 387917
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| |||| | ||| || | ||||||||| ||||| ||||| | || |||||||||||
Sbjct 387918 AGCGTTCGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGG 387977
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| || || ||
Sbjct 387978 ATTCCTTCCTTGTCCTG 387994
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| || | ||| | ||| || ||||| | |||||||||||| ||||| ||||| |||
Sbjct 388086 CCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAA 388145
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || | || || || | |||||||| ||||| ||||| | ||||||||||||||
Sbjct 388146 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 388205
Query 146171 ATTCCTTCTTTATCTTG 146187
|| || ||||| |||||
Sbjct 388206 ATGCCCTCTTTGTCTTG 388222
Score = 89.7 bits (98), Expect = 8e-13
Identities = 86/108 (80%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 146081 GTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139
|||||||| ||| || ||||| || ||||| | ||| | | ||| || | ||| || ||
Sbjct 387201 GTAGATTCCTTTTGA-ATATTGTAGTCTGATAAAGTGCGTCCATCCTCGAGTTGCTTGCC 387259
Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
|||||||||| |||||| ||||| |||||||| || |||||||||||
Sbjct 387260 TGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCCTCTTTATCTTG 387307
>seq2987
Length=818656
Score = 116 bits (128), Expect = 6e-21
Identities = 109/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| |||| ||| | || |||||||| | || ||||| || || ||||||||||
Sbjct 733342 TTCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTG 733283
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
|||||||||||| || || |||||||| ||||| || |||| | |||||||| ||||
Sbjct 733282 AAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAG 733223
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||| || |||||||||||
Sbjct 733222 GAATGCCCTCTTTATCTTG 733204
Score = 113 bits (124), Expect = 7e-20
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|| || | ||||| || ||||| || | || ||||| ||| || || ||||| || ||
Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGA-ATGTTATAGTCCGA 733738
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||||||||||| ||| || | |||||| || || ||||||| | ||||||||| |||||
Sbjct 733737 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGG 733678
Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229
||| |||||||| || || || || ||| ||| ||
Sbjct 733677 AATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGAC 733618
Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
||| |||||||| ||||| ||||| | |||||| | ||| || ||||||
Sbjct 733617 TTCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569
Score = 102 bits (112), Expect = 1e-16
Identities = 108/140 (77%), Gaps = 2/140 (1%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107
|||| |||| ||| | | ||||| || | || ||||| ||| || || ||||| |||
Sbjct 733570 TTCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGA-ATGTTATAGTCT 733512
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
||||||||||||| ||| || | |||||| || || ||||||| | |||||||| |||
Sbjct 733511 GAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGA 733452
Query 146168 GGAATTCCTTCTTTATCTTG 146187
||||| |||||||| || ||
Sbjct 733451 GGAATACCTTCTTTGTCCTG 733432
>seq2838
Length=268038
Score = 105 bits (116), Expect = 1e-17
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125
|| || || ||||| |||||||| || |||||||||||| || | ||| || | |||
Sbjct 122079 AACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGACAAAGTCCTACCATCT 122020
Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176
||||||||||| |||||||| ||||||| |||||||| || |||||||||
Sbjct 122019 TCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATTCCT 121969
>seq1957
Length=1295
Score = 84.2 bits (92), Expect = 3e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 163826 GATATTCCTTCAAAATTAACTAAAGGTTCAAATATTAATACTTTTCCTCTCGAATTTAAA 163885
||||||||||| || | || || |||||| ||||||| ||| ||| | || |||||
Sbjct 19 GATATTCCTTCGTAACTTACGAATGGTTCATATATTAAACATTTACCTTTTGACTTTAAT 78
Query 163886 ATTATTTTACAAGTTTCTATATATTTACACGAATATTGATATAATATATTATAATT 163941
|| | | |||| | |||||| |||||||| |||||||| | || | ||| | ||||
Sbjct 79 ATAAGTCTACATGCTTCTATGTATTTACATGAATATTGTTTTAGTTTATGAAAATT 134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743498238937600
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