Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3008 127 3e-24 seq2987 116 6e-21 seq2838 105 1e-17 seq1957 84.2 3e-11 >seq3008 Length=1134530 Score = 127 bits (140), Expect = 3e-24 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || |||||||| | ||| |||||||| || || ||||| || Sbjct 387399 CCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAG 387458 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | ||||||||||||||| ||||| | |||||||||||||| Sbjct 387459 AGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGG 387518 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| ||||||||| || ||| Sbjct 387519 ATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACT 387578 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| ||||| ||||| ||||||| ||||| | ||| || |||||| Sbjct 387579 TCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| | |||||||| ||||||||||| || ||||| ||||| || Sbjct 388314 CCACCGCGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGAC 388373 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | |||||||||||||||||||||||| |||||||||||||| Sbjct 388374 AAAGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGG 388433 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 388434 ATGCCTTCTTTGTCTTG 388450 Score = 114 bits (126), Expect = 2e-20 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| ||||| |||| ||| ||||| ||||| || ||||||||||| | Sbjct 387625 TTCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAG 387684 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | || || | ||| ||||||||||||||||| | |||||||| || | Sbjct 387685 ACAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTG 387744 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || || ||||||||||| |||||| ||| || | Sbjct 387745 GGATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGA 387804 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || ||||| |||||||| || | ||||||| ||| || ||||| Sbjct 387805 CTTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 105 bits (116), Expect = 1e-17 Identities = 168/248 (68%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||||| | |||||||| ||||||||||| || || || ||||| | Sbjct 388540 TTCCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGG 388599 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | ||| || | |||||||| ||||||||||| | |||||||| || | Sbjct 388600 ACAAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTG 388659 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| || ||||||||||| |||||| ||| ||| | Sbjct 388660 GAATACCCTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAA 388719 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT-AGAA 146287 |||| || || || ||||| || || ||||| || | || || |||||| | || | | Sbjct 388720 CTTCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCATTGTGTTCTGTA 388779 Query 146288 AAATATTT 146295 |||| ||| Sbjct 388780 AAATTTTT 388787 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || || ||||| | ||| |||||||| ||||| |||||||| Sbjct 387858 CCACCGCGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAG 387917 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | ||||||||| ||||| ||||| | || ||||||||||| Sbjct 387918 AGCGTTCGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGG 387977 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || || || Sbjct 387978 ATTCCTTCCTTGTCCTG 387994 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | ||| || ||||| | |||||||||||| ||||| ||||| ||| Sbjct 388086 CCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAA 388145 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || || || | |||||||| ||||| ||||| | |||||||||||||| Sbjct 388146 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 388205 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| ||||| Sbjct 388206 ATGCCCTCTTTGTCTTG 388222 Score = 89.7 bits (98), Expect = 8e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 146081 GTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 |||||||| ||| || ||||| || ||||| | ||| | | ||| || | ||| || || Sbjct 387201 GTAGATTCCTTTTGA-ATATTGTAGTCTGATAAAGTGCGTCCATCCTCGAGTTGCTTGCC 387259 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||| |||||| ||||| |||||||| || ||||||||||| Sbjct 387260 TGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCCTCTTTATCTTG 387307 >seq2987 Length=818656 Score = 116 bits (128), Expect = 6e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | || |||||||| | || ||||| || || |||||||||| Sbjct 733342 TTCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTG 733283 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||||| || || |||||||| ||||| || |||| | |||||||| |||| Sbjct 733282 AAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAG 733223 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||||||||| Sbjct 733222 GAATGCCCTCTTTATCTTG 733204 Score = 113 bits (124), Expect = 7e-20 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || | ||||| || ||||| || | || ||||| ||| || || ||||| || || Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGA-ATGTTATAGTCCGA 733738 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||||| ||| || | |||||| || || ||||||| | ||||||||| ||||| Sbjct 733737 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGG 733678 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| |||||||| || || || || ||| ||| || Sbjct 733677 AATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGAC 733618 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||| |||||||| ||||| ||||| | |||||| | ||| || |||||| Sbjct 733617 TTCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569 Score = 102 bits (112), Expect = 1e-16 Identities = 108/140 (77%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| |||| ||| | | ||||| || | || ||||| ||| || || ||||| ||| Sbjct 733570 TTCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGA-ATGTTATAGTCT 733512 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||||||||||| ||| || | |||||| || || ||||||| | |||||||| ||| Sbjct 733511 GAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGA 733452 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| |||||||| || || Sbjct 733451 GGAATACCTTCTTTGTCCTG 733432 >seq2838 Length=268038 Score = 105 bits (116), Expect = 1e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || || || ||||| |||||||| || |||||||||||| || | ||| || | ||| Sbjct 122079 AACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGACAAAGTCCTACCATCT 122020 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 ||||||||||| |||||||| ||||||| |||||||| || ||||||||| Sbjct 122019 TCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATTCCT 121969 >seq1957 Length=1295 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 163826 GATATTCCTTCAAAATTAACTAAAGGTTCAAATATTAATACTTTTCCTCTCGAATTTAAA 163885 ||||||||||| || | || || |||||| ||||||| ||| ||| | || ||||| Sbjct 19 GATATTCCTTCGTAACTTACGAATGGTTCATATATTAAACATTTACCTTTTGACTTTAAT 78 Query 163886 ATTATTTTACAAGTTTCTATATATTTACACGAATATTGATATAATATATTATAATT 163941 || | | |||| | |||||| |||||||| |||||||| | || | ||| | |||| Sbjct 79 ATAAGTCTACATGCTTCTATGTATTTACATGAATATTGTTTTAGTTTATGAAAATT 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743498238937600