Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3008 96.9 2e-15 seq2987 84.2 1e-11 >seq3008 Length=1134530 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| ||||| | ||||| || ||||| ||| || || || || || || || Sbjct 387626 TCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGA 387685 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| |||| ||||| || || ||||| | |||||||| || || Sbjct 387686 CAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGG 387745 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| || || ||||| |||| || | || | ||| | || ||||| Sbjct 387746 GATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGAC 387805 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||||||| ||||| |||||||| || || |||||||| Sbjct 387806 TTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| || || |||| || |||||| ||| ||||| |||||||| ||||| Sbjct 388541 TCCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGA 388600 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || || | ||| || || || ||||| | |||||||| ||| || Sbjct 388601 CAAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGG 388660 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||| || || || ||| ||||| | || | || | ||| | | ||| | Sbjct 388661 AATACCCTCTTTATCTTGAAT-TTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAA 388719 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | || || ||||| || || | || ||||||||||||||||| Sbjct 388720 CTTCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 388768 >seq2987 Length=818656 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || ||||| ||||| || || | | | || |||| || ||||| ||||| Sbjct 733761 TTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAA 733702 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| || || ||||| || || | | || ||||| || ||| ||||| | | Sbjct 733701 AATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTGTCCTGGAT-TTTGGCTTTTACGT 733643 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | |||| |||| | |||||| || | |||||||||||||| ||||| ||||||| Sbjct 733642 TTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCA 733583 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 733582 CGAAGATCTGCAT 733570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323060069556800