Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 96.9 2e-15
seq2987 84.2 1e-11
>seq3008
Length=1134530
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| ||||| ||||| | ||||| || ||||| ||| || || || || || || ||
Sbjct 387626 TCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGA 387685
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| || |||| |||| ||||| || || ||||| | |||||||| || ||
Sbjct 387686 CAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGG 387745
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||| || || ||||| |||| || | || | ||| | || |||||
Sbjct 387746 GATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGAC 387805
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||||||| ||||| |||||||| || || ||||||||
Sbjct 387806 TTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || ||||| || || |||| || |||||| ||| ||||| |||||||| |||||
Sbjct 388541 TCCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGA 388600
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| || | || || | ||| || || || ||||| | |||||||| ||| ||
Sbjct 388601 CAAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGG 388660
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| | ||| || || || ||| ||||| | || | || | ||| | | ||| |
Sbjct 388661 AATACCCTCTTTATCTTGAAT-TTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAA 388719
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || | || || ||||| || || | || |||||||||||||||||
Sbjct 388720 CTTCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 388768
>seq2987
Length=818656
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| || || ||||| ||||| || || | | | || |||| || ||||| |||||
Sbjct 733761 TTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAA 733702
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
||| || || ||||| || || | | || ||||| || ||| ||||| | |
Sbjct 733701 AATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTGTCCTGGAT-TTTGGCTTTTACGT 733643
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| |||| |||| | |||||| || | |||||||||||||| ||||| |||||||
Sbjct 733642 TTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCA 733583
Query 34377 CAAAGATCTGCAT 34389
| |||||||||||
Sbjct 733582 CGAAGATCTGCAT 733570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323060069556800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |