Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq2581 114 1e-20
>seq2581
Length=3237177
Score = 114 bits (126), Expect = 1e-20
Identities = 133/177 (75%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 16487 TTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546
|||||||| || |||| ||||| || || |||| |||||||||||||||||||
Sbjct 740676 TTTTCTTTCGGGTCAGAAATGTAAGTTTCAATGAGTAGTGAATACATTTCTGAATGAATA 740617
Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGA 16605
|| || || || || || ||||||||||| || | ||||| | |||| |||||| ||
Sbjct 740616 TTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTCTGCGATTTTTACTTCTTGA 740557
Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662
| || ||||| ||||||||| ||||| |||||||| ||| ||||| |||||
Sbjct 740556 CT-GAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGAAGCAGCAAAGAACGC 740501
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/200 (70%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120
|||||||||||||| |||||||| || || ||| | ||| |||||||||||
Sbjct 741372 AATAATCTATCCGCGACAAATTCGATGTAGGTGCACATGAGTGTACAATTCATTCCTATC 741313
Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180
| || || || | ||||| ||||| || | |||||| || | || || || || ||
Sbjct 741312 ATTTCGACTGGTAATGCTTGCGTTAAGAATTCTTTTTCAATTTCCACAGCATCCATTATG 741253
Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG---TGTTTAAACATTATACAA 16237
|| | || | || | | |||| ||| ||| | | ||||||||||||| ||
Sbjct 741252 AT--CGTTTTC-ACGCGCTCAAACGAAGGCTTTTGCACGATATGTTTAAACATTAAGCAC 741196
Query 16238 GCAAAATCACAATGCAATCC 16257
|||||||||||||| |||||
Sbjct 741195 GCAAAATCACAATGTAATCC 741176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462494482358000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |