Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2581 114 1e-20 >seq2581 Length=3237177 Score = 114 bits (126), Expect = 1e-20 Identities = 133/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 16487 TTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 |||||||| || |||| ||||| || || |||| ||||||||||||||||||| Sbjct 740676 TTTTCTTTCGGGTCAGAAATGTAAGTTTCAATGAGTAGTGAATACATTTCTGAATGAATA 740617 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGA 16605 || || || || || || ||||||||||| || | ||||| | |||| |||||| || Sbjct 740616 TTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTCTGCGATTTTTACTTCTTGA 740557 Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 | || ||||| ||||||||| ||||| |||||||| ||| ||||| ||||| Sbjct 740556 CT-GAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGAAGCAGCAAAGAACGC 740501 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 |||||||||||||| |||||||| || || ||| | ||| ||||||||||| Sbjct 741372 AATAATCTATCCGCGACAAATTCGATGTAGGTGCACATGAGTGTACAATTCATTCCTATC 741313 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | || || || | ||||| ||||| || | |||||| || | || || || || || Sbjct 741312 ATTTCGACTGGTAATGCTTGCGTTAAGAATTCTTTTTCAATTTCCACAGCATCCATTATG 741253 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG---TGTTTAAACATTATACAA 16237 || | || | || | | |||| ||| ||| | | ||||||||||||| || Sbjct 741252 AT--CGTTTTC-ACGCGCTCAAACGAAGGCTTTTGCACGATATGTTTAAACATTAAGCAC 741196 Query 16238 GCAAAATCACAATGCAATCC 16257 |||||||||||||| ||||| Sbjct 741195 GCAAAATCACAATGTAATCC 741176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462494482358000