Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2948 89.7 1e-12 seq3007 84.2 5e-11 >seq2948 Length=1482923 Score = 89.7 bits (98), Expect = 1e-12 Identities = 128/180 (71%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 ||||| || || || || | || ||||||||||||| | |||||| | || ||||||| Sbjct 752576 TGTCCACCGTTTAAAATCATCATATTGGACGAGGCGGATAGCATGACCGGCGCCGCGCAG 752635 Query 254262 TCCGCCCTCCGCCGAACGATGGA----GACGCACTCCGTTGTGACGCGTTTTTGCCTGGT 254317 | || ||||| |||| ||||| || |||| | | ||||| || |||||||| Sbjct 752636 ACGGCGCTCCGTCGAATCATGGAGAAGGAAGCACACAG----CACGCGCTTCTGCCTGGT 752691 Query 254318 GTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 |||||| || ||||| |||||| ||| | || || || ||| | || || ||||| Sbjct 752692 GTGCAATTATCTGTCGCGAATCATCAAGCCGATCGCGTCACGCTGCACGAAATTCCGATT 752751 >seq3007 Length=2871884 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/205 (69%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 248828 TTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAAC 248887 ||| ||| ||||| ||||| | ||||| | |||||| |||||| ||| |||||| Sbjct 1589741 TTGGTTTTAAAACACTGGAAAGGAGCTATCTATTGAAAATTAATGGCACGATAGTGGAAA 1589800 Query 248888 GAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCG 248947 || || |||||||||||| |||||||||| || ||||| | | ||||| |||| | Sbjct 1589801 GACCACAACACATGTTGATGAGAGTGGCTGTTGGCATTCATGAAAACGACATTGAGAAAG 1589860 Query 248948 TGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCT 249007 | || || || | | | ||||| | | || ||||| |||||||| | | Sbjct 1589861 CTATAGAAACATATAACTATTTATCCGAACGATACTTTACGCATGCTTCACCGACGTTAT 1589920 Query 249008 TCAACGCCGGTACCGTCAACAATCA 249032 | |||||| | || ||||||||| Sbjct 1589921 TTAACGCCTGCAC---CAACAATCA 1589942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073724714375040