Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3008 95.1 1e-14 >seq3008 Length=1134530 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || || || || || ||| || || ||||| ||||| || || ||| | Sbjct 387870 CTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCA 387929 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || |||||||||||||| || ||||| |||||||| || ||||| | || |||||| Sbjct 387930 TCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTG 387989 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||||||| ||| || | | | |||| |||| || || | || || Sbjct 387990 TCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATG 388049 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| |||||||| |||||||| Sbjct 388050 GTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTC 45183 ||| || || ||||| || || |||||||| ||||| ||| ||| ||| |||| Sbjct 388100 TAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTC 388159 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || ||||||||||| || ||||| ||||| || || ||||| | ||||| ||||| Sbjct 388160 TTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTC 388219 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 ||||||| |||||| | | | | || | || || || | ||||| || Sbjct 388220 TTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGT 388279 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || ||||| || || || || ||||| Sbjct 388280 CTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | || ||| | ||||| |||| || |||||||| |||||||| ||| | Sbjct 388542 CCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGAC 388601 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | |||| | || || || ||||||||||| || ||||| ||||| || ||||| || Sbjct 388602 AAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGA 388661 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||| || || |||||| || || | | | | || | | || || Sbjct 388662 ATACCCTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACT 388721 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || || || |||| |||||||||||||| ||||| Sbjct 388722 TCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 388768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395060610613630