Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2987 140 3e-28
seq3008 116 3e-21
seq2581 114 1e-20
seq2856 96.9 3e-15
>seq2987
Length=818656
Score = 140 bits (154), Expect = 3e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || ||||||||||| || ||||| || ||||| |||| || ||| | ||
Sbjct 733342 ATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTCT 733401
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||||| || ||| | ||| |||||| ||||| | || || || |||
Sbjct 733402 GACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCAG 733461
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| |||||||| ||||||| | ||| | || ||||||
Sbjct 733462 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAAC 733521
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||||| ||||| || ||||| ||||||||
Sbjct 733522 ATTCAAAAGGAATCCACACTTCACCTGGTACT 733553
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| || || || ||||||||||| ||||| |||| || ||| | |||
Sbjct 733570 ATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTCC 733629
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||||| || ||| | ||| |||||| ||||| | || || || |||
Sbjct 733630 GACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCAG 733689
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||||| || ||||| |||||||| ||||||| | ||| | || ||||||
Sbjct 733690 CAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAAC 733749
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|||||||| ||||| || || || |||| | |||| |||| |||
Sbjct 733750 ATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCGACTTCGGGGAGGT 733797
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| || || ||||| || || || ||||| |||||| | || || ||| | ||
Sbjct 733113 CATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTC 733172
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | | |||| |||||| | || || || || ||| | || || || ||
Sbjct 733173 TGACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCA 733232
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || |||||||| ||||| ||||||||| | ||| | ||||||||
Sbjct 733233 GCAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTATAA 733292
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401
||| ||||| ||||| || || ||| ||||
Sbjct 733293 CATCCAAAAGGAATCCACACTCCATTTGGT 733322
>seq3008
Length=1134530
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| || ||||| ||||| ||||| ||||| | || ||||| | ||
Sbjct 387625 ATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATCA 387566
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| | |||||| | ||| ||||| ||||| | || || || |||
Sbjct 387565 GATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCAG 387506
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||| | || || ||||| ||||| | ||||| | || | |||||| |||
Sbjct 387505 CAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAAC 387446
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401
|||||||||||||| ||||| ||| ||||
Sbjct 387445 ATTCAAAAAGAATCCACTCTGCATTTGGT 387417
Score = 100 bits (110), Expect = 3e-16
Identities = 147/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | ||| |||||||||||| | || || || ||
Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTATA 31370
|||||| | || || || || ||||| | ||||| || | || | | ||||| |
Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCA--GATTACA 387907
Query 31371 ACATTCAAAAAGAATCGACTCTTCAT 31396
| |||||||||||||| |||||||||
Sbjct 387906 ATATTCAAAAAGAATCCACTCTTCAT 387881
>seq2581
Length=3237177
Score = 114 bits (126), Expect = 1e-20
Identities = 135/183 (74%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728
|||||| | ||||| || || |||||||| || || || || ||||| ||||||||
Sbjct 740474 GAGAGATACTTTATCTCTCATGTTTTGGCGTTCTTTGCTGCTTCTGATGGAATTGTTAAT 740533
Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788
|| || || | |||||||| |||||||| || | | || || | || |||||
Sbjct 740534 GAAAACTTAATTGAAAGATTCAGTCAAGAAGTAAAAATCGCAGAAGCACGCTGTTTTTAT 740593
Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848
|| || ||| | ||||| ||||| | ||||||||||||||||| |||||||| || ||
Sbjct 740594 GGTTTCCAAATCGCCATAGAAAATATTCATTCAGAAATGTATTCACTACTCATTGAAACT 740653
Query 57849 TAC 57851
|||
Sbjct 740654 TAC 740656
>seq2856
Length=4748033
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
|| |||||| ||||||||||| || || || || || || || ||| |||| || ||| |
Sbjct 1620870 AACCATGCAGATTTTCGTAAAAACCCTCACGGGTAAGACTATTACCCTCGAGGTAGAATC 1620929
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||| || | | | |||| || ||| | ||| ||| || || || | || || ||
Sbjct 1620930 GTCGGATACTATAGAAAATGTAAAAGCCAAGATACAGGATAAAGAGGGAATTCCACCTGA 1620989
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367
|||||||| || || ||||||||||| ||| ||||||| | | | ||| | ||||
Sbjct 1620990 TCAGCAGCGACTTATCTTCGCTGGCAAGCAGCTGGAAGA-TGGACGTACTCTTTCAGATT 1621048
Query 31368 ATAACATTCAAAAAG 31382
|||| || |||||||
Sbjct 1621049 ATAATATCCAAAAAG 1621063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445749516597600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |