Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3007 109 7e-19 seq2841 93.3 5e-14 >seq3007 Length=2871884 Score = 109 bits (120), Expect = 7e-19 Identities = 180/257 (70%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 ||| || || ||||| || ||| | || | || |||||||| || || ||||| || Sbjct 1589961 AAATCACCTGGACATCTGTTGATTGTTGGTGCAGGCGTTAAATAACGTCGGTGAAGCATG 1589902 Query 63695 CGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 |||||| || ||| || || ||| || || || || |||||| || || || || Sbjct 1589901 CGTAAAGTATCGTTCGGATAAATAG-TTATATGTTTCTATAGCTTTCTCAATGTCGTTTT 1589843 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 |||||| || || || || | ||| |||||||| || |||||||| || || || | Sbjct 1589842 CATGAATGCCAACAGCCACTCTCATCAACATGTGTTGTGGTCTTTCCACTATCGTGCCAT 1589783 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873 | |||||||| | ||| |||||| ||||||||||||| ||| || || |||| Sbjct 1589782 TAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAACCAATATAATTATAATTGAAGT 1589723 Query 63874 CTCGTTCGTAAATAATA 63890 ||| || || || ||| Sbjct 1589722 CTCTGTCATATATTATA 1589706 >seq2841 Length=357093 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| | |||||||| ||||| || | ||| |||||||| ||||| || |||| || Sbjct 189329 CACTAAAAACCTTTTTTGTCTCCTTATGCAAATTGGATATGGCAATTCTAGCTGCTAAAA 189388 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCT-GCTATTTCGGCTGCCAGAGTGTCC 64124 | ||||||| |||||||| | || || || | || ||| || |||| | ||| Sbjct 189389 TTTCATAATCTGGATGTTGACT-GTTCATATGCATTGCAGTTTTAGCCGCCAAGTTATCC 189447 Query 64125 AATTCTACCGTTGTTACTCCATTATATA 64152 ||||| || |||||||||||| ||||| Sbjct 189448 AATTCAACTGTTGTTACTCCAGAATATA 189475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629793745658400