Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2581 100 3e-16 seq3007 93.3 4e-14 seq2841 89.7 5e-13 >seq2581 Length=3237177 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||| || Sbjct 740635 ATACATTTCTGAATGAATATTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTC 740576 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 || | ||| || | |||||||| ||| || ||||| ||||| |||||| Sbjct 740575 TGCGATTTTTACTTCTTGACTGAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGA 740516 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 || ||||| || || | | ||| ||||||||| | ||||| Sbjct 740515 AGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTATCTCTCGTC 740471 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/224 (69%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 ||||||||| | |||||| | ||||||||||| ||||| ||||| || || || Sbjct 741396 ACTTTTTCAAATCCTAACGCGACGAATAATCTATCCGCGACAAATTCGATGTAGGTGCAC 741337 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | ||||||||| ||||| | || || || | || || || || || ||| Sbjct 741336 ATGAGTGTACAATTCATTCCTATCATTTCGACTGGTAATGCTTGCGTTAAGAATTCTTTT 741277 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGT--- 11608 || || | || ||||| || || |||| || | || || | | | || | | Sbjct 741276 TCAATTTCCACAGCATCCATTATGATCG---TTTTCACGCGCTCAAACGAAGGCTTTTGC 741220 Query 11609 AATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | | ||||||||||||||| |||||||||||||||||||| || Sbjct 741219 ACGATATGTTTAAACATTAAGCACGCAAAATCACAATGTAATCC 741176 >seq3007 Length=2871884 Score = 93.3 bits (102), Expect = 4e-14 Identities = 171/244 (70%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 37114 TCTCTCAATAGGTGTGGATTTACAACCTGA--AAATCTCCAGATAATACTCTTCTTGTAT 37171 |||| ||| || || ||||| || | ||| || || || || ||||| | ||| | Sbjct 1591682 TCTCGCAACAGATGCGGATTAACGA--TGATGAATTCCCCGGACAATACGCGTCTCACGT 1591625 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 | |||||||| || |||| || ||||| || || || | | || || | || || | Sbjct 1591624 AAATATTGCTCGTGTATGCCTCGATGGATTCGTTGTTTCCGAGAATCTGCGCCGTGGAAG 1591565 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT 37291 | || ||||| |||||||||| ||| |||||||| |||||| | | ||||| | Sbjct 1591564 CCGTCGGCATAGGTGCTATTAAAAGCGAATTTCTCACTCCATGC-TCTGCGATCTCTGCT 1591506 Query 37292 TT-AGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTA 37348 || | | | ||||||||| |||||||| || || | || ||||||||||||||| | Sbjct 1591505 TTCAACTTGTCCCAATCCCACAAATCTGTCGGCTTGACGTT--CCACATATCATATTGGA 1591448 Query 37349 GAAT 37352 | || Sbjct 1591447 GGAT 1591444 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/126 (77%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 38092 TTCTTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 |||||| |||||| |||||||| || |||||||| ||||| ||||||| ||||| | Sbjct 1590316 TTCTTT--TAAGCTCCAGAAAATCAAAGATATCAGCATGCCACGGTTCTAAGTAAATTGC 1590259 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | |||||||||||||||| ||||| |||| || ||| || | ||| ||||||| Sbjct 1590258 AAACGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATAGATAGCCATGTCGTTATATAA 1590199 Query 38211 TCTTAA 38216 | |||| Sbjct 1590198 TTTTAA 1590193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 38418 GGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGT 38477 |||||||||||| || || || ||||| | || || ||| || ||||| |||||||| Sbjct 1589928 GGCGTTAAATAACGTCGGTGAAGCATGCGTAAAGTATCGTTCGGATAAATAGTTATATGT 1589869 Query 38478 TTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATG 38537 |||||| | | || || || | ||||| || | || || ||||| | ||| || Sbjct 1589868 TTCTATAGCTTTCTCAATGTCGTTTTCATGAATGCCAACAGCCACTCTCATCAACATGTG 1589809 Query 38538 TTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTT 38597 |||||||||||| | ||| | ||| ||| | |||||| |||| | |||||| Sbjct 1589808 TTGTGGTCTTTCCACTATCGTGCCATTAATTTTCAATAGATAGCTCCTTTCCAGTGTTTT 1589749 Query 38598 TATTCCAAAATAACTATA--TGAATAATCTCTATCGTAT 38634 | |||| |||| |||| ||| | ||||| || ||| Sbjct 1589748 AAAACCAATATAATTATAATTGA--AGTCTCTGTCATAT 1589712 >seq2841 Length=357093 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 37403 TAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATAT 37462 |||||| ||| ||||||| |||||| || | ||||| | ||| || || ||||| | || Sbjct 187557 TAGCTATTTCACAACTAGCTTCTAGAGCCCCGTAATAGAGTGTCTCAAAGATTTGAACAT 187616 Query 37463 TTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCA 37522 | | | || ||||| | ||| ||||| | ||| | || ||| || ||| |||| || | Sbjct 187617 TGAGCTTATTAGCTTCCTTGCTGTCGAACGGATATCTCATTAAGATGAACGCATCCGCTA 187676 Query 37523 AACCCTGAACACCGATACCTAT 37544 | || || | |||||||||||| Sbjct 187677 ATCCTTGTATACCGATACCTAT 187698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468507054623200