Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3007 118 2e-21 seq2841 98.7 1e-15 >seq3007 Length=2871884 Score = 118 bits (130), Expect = 2e-21 Identities = 192/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 ||| || || ||||| || ||| | || | || |||||||| || || ||||| || Sbjct 1589961 AAATCACCTGGACATCTGTTGATTGTTGGTGCAGGCGTTAAATAACGTCGGTGAAGCATG 1589902 Query 80367 CGTAAACCATTTTTCAGACAG-TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 |||||| || ||| || | ||| || || || || |||||| || || || || Sbjct 1589901 CGTAAAGTATCGTTCGGATAAATAG-TTATATGTTTCTATAGCTTTCTCAATGTCGTTTT 1589843 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 |||||| || || || || | ||| |||||||| || |||||||| || ||| || || Sbjct 1589842 CATGAATGCCAACAGCCACTCTCATCAACATGTGTTGTGGTCTTTCCACTATCGTGCCAT 1589783 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | |||||||| | || |||||| ||||||||||||| ||| || || |||| Sbjct 1589782 TAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAACCAATATAATTATAATTGAAGT 1589723 Query 80546 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 80579 ||| || || || ||| | |||| ||||| || Sbjct 1589722 CTCTGTCATATATTATAGCAGAGTCCAGTTTTTC 1589689 Score = 98.7 bits (108), Expect = 1e-15 Identities = 194/283 (69%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 78996 ATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 79055 |||||| || |||| | |||||| | | |||| || ||| | ||||||||||| Sbjct 1591722 ATTCTTCATATCTTTGTCCCATAAACCTTTGGCGGTCAAGTCTCGCAACAGATGCGGATT 1591663 Query 79056 AACTACTTGA--AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGT 79113 ||| | ||| ||||| || |||||||| | | ||||||||| || || |||| Sbjct 1591662 AACGA--TGATGAATTCCCCGGACAATACGCGTCTCACGTAAATATTGCTCGTGTATGCC 1591605 Query 79114 TCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACC 79173 || | ||||| || ||||| | ||| || || || || ||||| ||||||||||| | Sbjct 1591604 TCGATGGATTCGTTGTTTCCGAGAATCTGCGCCGTGGAAGCCGTCGGCATAGGTGCTATT 1591545 Query 79174 AATAAACTATTTCTAAGACCGTATGATCT--GATTTTATCTTTTAGAGATTCCCAATCCC 79231 || | |||||| | || ||| ||| ||| | |||| | |||||||||| Sbjct 1591544 AAAAGCGAATTTCTCACTCC--ATGCTCTGCGATCTCTGCTTTCAACTTGTCCCAATCCC 1591487 Query 79232 AAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 | | ||| | ||| || ||||| | ||||||||| || || Sbjct 1591486 ACAAATCTGTCGGCTTGACGTTCCACATATCATATTGGAGGAT 1591444 >seq2841 Length=357093 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| | |||||||| ||||| || | ||| |||| ||| ||||| || ||||||| Sbjct 189329 CACTAAAAACCTTTTTTGTCTCCTTATGCAAATTGGATATGGCAATTCTAGCTGCTAAAA 189388 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTG-GCTGCTATTTCGGCTGCCAGAGTGTCC 80796 | |||||||||||||||| | || || || ||| ||| || |||| | ||| Sbjct 189389 TTTCATAATCTGGATGTTGACT-GTTCATATGCATTGCAGTTTTAGCCGCCAAGTTATCC 189447 Query 80797 AATTCTACCGTTGTTACTCCATTATATA 80824 ||||| || |||||||||||| ||||| Sbjct 189448 AATTCAACTGTTGTTACTCCAGAATATA 189475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718241595569200