Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3008 125 5e-24 seq2987 104 2e-17 >seq3008 Length=1134530 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || ||||| |||| ||| | |||| |||||||| | ||| ||||| ||| Sbjct 387627 CCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGAC 387686 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| |||| ||| || || ||||||||||| ||||| ||||| | || Sbjct 387687 AAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGG 387746 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || ||| |||| || | ||| || || || |||||| Sbjct 387747 ATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACT 387806 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 387807 TCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || || || ||||| | |||| || ||||| | ||||||||| || Sbjct 387858 CCACCGCGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAG 387917 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | |||||| |||||||| ||||| ||||||||||| | || Sbjct 387918 AGCGTTCGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGG 387977 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| || | ||||| | | | |||||| |||||||| Sbjct 387978 ATTCCTTCCTTGTC-CTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGAC 388036 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || |||||||| || ||||||||||||||||||||||| Sbjct 388037 TTCTAAAGTGATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||||||| | |||||||| | ||| ||||| || | |||||||||||| Sbjct 388542 CCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGAC 388601 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || | ||||| |||||||||||||| ||||| ||||||| || Sbjct 388602 AAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGA 388661 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || || |||| || | ||| || || ||| || || Sbjct 388662 ATACCCTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACT 388721 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||||||||| || || | || |||||||| || |||||| Sbjct 388722 TCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCATT 388769 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || || |||||||| | |||| || ||||| | ||||||||||| Sbjct 387399 CCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAG 387458 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | |||||| || ||||| ||||| ||||| ||||| | || Sbjct 387459 AGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGG 387518 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || ||||||| | | | || || ||||| || Sbjct 387519 ATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACT 387578 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| ||| || ||||| || ||||||||||| || ||||| |||||| Sbjct 387579 TCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | ||| || ||||| | ||| || || || | |||||||||||| Sbjct 388086 CCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAA 388145 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || |||| || | ||||| |||||||| ||||| ||||| ||||| | || Sbjct 388146 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 388205 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || || | || || | ||| ||| || || ||||| Sbjct 388206 ATGCCCTCTTTGTCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACT 388265 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||| || || ||||| ||||||||||| || ||||| ||||| Sbjct 388266 TCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || |||||||| | |||||||| | ||| ||||| || | ||||||||| ||| Sbjct 388314 CCACCGCGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGAC 388373 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || | |||||| || ||||||||||||| ||| ||||| | || Sbjct 388374 AAAGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGG 388433 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || || | || || | | | |||||| || || || Sbjct 388434 ATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACT 388493 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | |||||| || ||||| || | ||||| || ||||| |||||| Sbjct 388494 TCCAACGTTATGGTCTTTCCTGTCAAGGTTTTAACGAAAATCTGCATT 388541 >seq2987 Length=818656 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | || |||||||||| ||| |||||||| | || ||||| || Sbjct 733340 CCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAA 733281 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| ||||||||||| || || || |||| ||||| ||||| | || Sbjct 733280 AGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 733221 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || |||| ||||||| | | | ||||| ||| || || Sbjct 733220 ATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACC 733161 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || || || |||||||| |||||||| Sbjct 733160 TCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| || ||||| |||| ||| |||||||| | || || || || Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAA 733737 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| |||||||||||| ||||||| || || ||||| | || Sbjct 733736 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGA 733677 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| || | | | |||||| ||| ||||| Sbjct 733676 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACT 733617 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || || |||||||| || || |||||| Sbjct 733616 TCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | || || || || | || | | || |||| |||||||||||| ||| Sbjct 733532 TCCTTTTGAATGTTATAGTCTGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAA 733473 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| ||||| ||||| | || | ||||||||| || ||| |||| || | Sbjct 733472 ATCAGACGCTGCTGATCAGGAGGAATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTT 733413 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| ||| ||||| || | ||| || || || || || ||||| || ||| Sbjct 733412 TCGATCGTGTCAGAAGCTTCGACTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACA 733353 Query 43099 AAAATTTGCATT 43110 || ||||||||| Sbjct 733352 AAGATTTGCATT 733341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381355516735740