Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3007 109 7e-19 seq2581 104 3e-17 seq2841 93.3 6e-14 >seq3007 Length=2871884 Score = 109 bits (120), Expect = 7e-19 Identities = 190/274 (69%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 ||| || || ||||| || ||| | || | || |||||||| || || ||||| || Sbjct 1589961 AAATCACCTGGACATCTGTTGATTGTTGGTGCAGGCGTTAAATAACGTCGGTGAAGCATG 1589902 Query 72450 CGTAAACCATTTTTCAGACAG-TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 |||||| || ||| || | ||| || || || || |||||| || || || || Sbjct 1589901 CGTAAAGTATCGTTCGGATAAATAG-TTATATGTTTCTATAGCTTTCTCAATGTCGTTTT 1589843 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 ||| || || || || || | ||| ||||| || || |||||||| || ||| || || Sbjct 1589842 CATGAATGCCAACAGCCACTCTCATCAACATGTGTTGTGGTCTTTCCACTATCGTGCCAT 1589783 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | |||||||| | ||| |||||| ||||||||||||| ||| || || |||| Sbjct 1589782 TAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAACCAATATAATTATAATTGAAGT 1589723 Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662 ||| || || || ||| | || | ||||| || Sbjct 1589722 CTCTGTCATATATTATAGCAGAGTCCAGTTTTTC 1589689 >seq2581 Length=3237177 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 |||||||||||||||||| ||||| ||||| || || || || || ||||| | || || Sbjct 740635 ATACATTTCTGAATGAATATTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTC 740576 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 | | | ||||||| || |||| |||| ||| ||||| || || ||||| ||| Sbjct 740575 TGCGATTTTTACTTCTTGACTGAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGA 740516 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 42519 || ||||| |||||||| ||||| ||||| ||| | ||||| Sbjct 740515 AGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTATCTCTCGTC 740471 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42561 CTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCAT 42620 |||||||||||| |||||||| || ||| | ||||| || ||||| | ||||||||| Sbjct 740294 CTACTTCTTCTATAGTCCAAAAAGAGGCTACAGCCTTCTTGTACATTTCCCAGATATCGG 740235 Query 42621 GATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 |||||||||| || || || ||||| | |||||| Sbjct 740234 GATATTGAATGGGAAAGATTACAAAGCGGTTTGGA 740200 >seq2841 Length=357093 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| | |||||||| ||||| || | ||| |||| ||| ||||| || |||| || Sbjct 189329 CACTAAAAACCTTTTTTGTCTCCTTATGCAAATTGGATATGGCAATTCTAGCTGCTAAAA 189388 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTG-GCTGCTATTTCTGCTGCCAGAGTGTCC 72879 | |||||||||||||||| | || || || ||| ||| || |||| | ||| Sbjct 189389 TTTCATAATCTGGATGTTGACT-GTTCATATGCATTGCAGTTTTAGCCGCCAAGTTATCC 189447 Query 72880 AATTCTACCGTTGTTACTCCATTATATA 72907 ||||| || |||||||||||| ||||| Sbjct 189448 AATTCAACTGTTGTTACTCCAGAATATA 189475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671113780602800