Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3007 109 7e-19
seq2581 104 3e-17
seq2841 93.3 6e-14
>seq3007
Length=2871884
Score = 109 bits (120), Expect = 7e-19
Identities = 190/274 (69%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449
||| || || ||||| || ||| | || | || |||||||| || || ||||| ||
Sbjct 1589961 AAATCACCTGGACATCTGTTGATTGTTGGTGCAGGCGTTAAATAACGTCGGTGAAGCATG 1589902
Query 72450 CGTAAACCATTTTTCAGACAG-TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508
|||||| || ||| || | ||| || || || || |||||| || || || ||
Sbjct 1589901 CGTAAAGTATCGTTCGGATAAATAG-TTATATGTTTCTATAGCTTTCTCAATGTCGTTTT 1589843
Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568
||| || || || || || | ||| ||||| || || |||||||| || ||| || ||
Sbjct 1589842 CATGAATGCCAACAGCCACTCTCATCAACATGTGTTGTGGTCTTTCCACTATCGTGCCAT 1589783
Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628
| |||||||| | ||| |||||| ||||||||||||| ||| || || ||||
Sbjct 1589782 TAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAACCAATATAATTATAATTGAAGT 1589723
Query 72629 CTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662
||| || || || ||| | || | ||||| ||
Sbjct 1589722 CTCTGTCATATATTATAGCAGAGTCCAGTTTTTC 1589689
>seq2581
Length=3237177
Score = 104 bits (114), Expect = 3e-17
Identities = 122/165 (74%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414
|||||||||||||||||| ||||| ||||| || || || || || ||||| | || ||
Sbjct 740635 ATACATTTCTGAATGAATATTTTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTC 740576
Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474
| | | ||||||| || |||| |||| ||| ||||| || || ||||| |||
Sbjct 740575 TGCGATTTTTACTTCTTGACTGAATCTTTCAATTAAGTTTTCATTAACAATTCCATCAGA 740516
Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 42519
|| ||||| |||||||| ||||| ||||| ||| | |||||
Sbjct 740515 AGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTATCTCTCGTC 740471
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 42561 CTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCAT 42620
|||||||||||| |||||||| || ||| | ||||| || ||||| | |||||||||
Sbjct 740294 CTACTTCTTCTATAGTCCAAAAAGAGGCTACAGCCTTCTTGTACATTTCCCAGATATCGG 740235
Query 42621 GATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655
|||||||||| || || || ||||| | ||||||
Sbjct 740234 GATATTGAATGGGAAAGATTACAAAGCGGTTTGGA 740200
>seq2841
Length=357093
Score = 93.3 bits (102), Expect = 6e-14
Identities = 111/148 (75%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
||||||| | |||||||| ||||| || | ||| |||| ||| ||||| || |||| ||
Sbjct 189329 CACTAAAAACCTTTTTTGTCTCCTTATGCAAATTGGATATGGCAATTCTAGCTGCTAAAA 189388
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTG-GCTGCTATTTCTGCTGCCAGAGTGTCC 72879
| |||||||||||||||| | || || || ||| ||| || |||| | |||
Sbjct 189389 TTTCATAATCTGGATGTTGACT-GTTCATATGCATTGCAGTTTTAGCCGCCAAGTTATCC 189447
Query 72880 AATTCTACCGTTGTTACTCCATTATATA 72907
||||| || |||||||||||| |||||
Sbjct 189448 AATTCAACTGTTGTTACTCCAGAATATA 189475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671113780602800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |