Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3008 127 2e-24 seq2987 122 9e-23 >seq3008 Length=1134530 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || ||||||||||| | ||||||||||| || || ||||||||| Sbjct 388086 CCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAA 388145 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||| || ||||| || ||| |||||| ||| |||||||| ||||| Sbjct 388146 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 388205 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| ||||||| || | | || | || || | | ||| ||| Sbjct 388206 ATGCCCTCTTTGTCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACT 388265 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | ||||| ||||| || |||||| Sbjct 388266 TCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCATA 388313 Score = 120 bits (132), Expect = 3e-22 Identities = 159/219 (73%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG-- 143029 |||||||||||||| || ||||||||||| || |||||||| | | | | |||| Sbjct 387872 CAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATC--TGAGAGCGTTCGACCA 387929 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||||||||| || ||| |||||| ||| || ||||| ||||| || ||||| ||| Sbjct 387930 TCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTG 387989 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||||| || | | || | ||||| | | || ||||| | ||| | Sbjct 387990 TCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATG 388049 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || || || || | ||||| || || ||||||||| || Sbjct 388050 GTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCATACCT 388088 Score = 113 bits (124), Expect = 5e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG-- 143029 |||||| ||||| | || ||||||||||| |||||||||||| | || |||| Sbjct 387413 CAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGT--TCGACCA 387470 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| |||||||| |||||| |||||| ||| |||||||| ||||| || ||||||||| Sbjct 387471 TCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTG 387530 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || |||||| ||| | | || | || || | | || ||||| | || | Sbjct 387531 TCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATG 387590 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || || | ||||| ||||| || ||||| Sbjct 387591 GTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||| | |||||||| || || || |||||||| || |||| ||||| Sbjct 388331 AACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTC 388390 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||||| |||||| | |||| | |||||||| ||||| |||||||||||||| Sbjct 388391 AAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTG 388450 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||||| || | | || | ||||| | | ||| ||||| | || | ||||| Sbjct 388451 AATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTT 388510 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| ||||| ||||| || ||||| Sbjct 388511 TCCTGTCAAGGTTTTAACGAAAATCTGCAT 388540 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||| | |||||||| || || |||||||||||| || |||| ||||| Sbjct 388559 AACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTC 388618 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || ||||| || ||| | |||| ||| ||||||||||| || || || ||||| || Sbjct 388619 AAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTG 388678 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||||| | || | || || | | ||| ||||||| ||| | || || Sbjct 388679 AATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTT 388738 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || |||||||| || || || || ||||| Sbjct 388739 CCCAGTCAATGTCTTCACAAAGATCTGCAT 388768 >seq2987 Length=818656 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||||||| ||||| | ||| ||||| ||||| ||||| ||||| Sbjct 733340 CCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAA 733281 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | |||||||||||| |||||||||| |||||||| ||||| Sbjct 733280 AGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 733221 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| ||||| || || || ||| | | ||| | ||||| | | ||| || Sbjct 733220 ATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACC 733161 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || | || || || || |||||||| Sbjct 733160 TCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||| || | |||| ||| ||||| ||||| ||||| || || Sbjct 733568 CCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAA 733509 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| || || | |||||||| |||||||| ||||| Sbjct 733508 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGA 733449 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||||| | ||| | |||||| | | ||| ||| Sbjct 733448 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACT 733389 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| || | || ||||| || |||||||| Sbjct 733388 TCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||||| || || | || ||||| ||||| ||||| || || Sbjct 733796 CCTCCCCGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAA 733737 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| || || | ||||||||||||||||| ||||| Sbjct 733736 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGA 733677 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||| ||||| | ||| | |||||| | | ||| ||| Sbjct 733676 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACT 733617 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || | |||||| ||||| || ||||| Sbjct 733616 TCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506995196829600