Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3008 134 1e-26 seq2987 116 3e-21 >seq3008 Length=1134530 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| ||||| || ||||| |||||||| |||||||||||| || ||| | Sbjct 387411 CTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCA 387470 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | |||||| ||||| | |||||||| || || || || |||||||||||| Sbjct 387471 TCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTG 387530 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || |||||| ||| || ||| | || || ||||| || || ||||| || || Sbjct 387531 TCTTGAATTTTAGCT-TTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGAT 387589 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| ||||| |||||||| || ||||| ||||| Sbjct 387590 GGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 132 bits (146), Expect = 3e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || |||||||||||||| ||||| |||||||| || |||||||| || ||| | Sbjct 387870 CTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCA 387929 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | |||||| || || | |||||||| ||||| || || |||||||| ||| Sbjct 387930 TCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTG 387989 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||| || | || || || || || || ||||| || ||| Sbjct 387990 TCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATG 388049 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| |||||||| ||||||||||||||| Sbjct 388050 GTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCATA 388085 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 |||||||||||| || || || ||||| || || ||||||||| || | | |||| Sbjct 388100 TAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTC 388159 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | ||||| || || | |||||||| || || || || || || |||||||| Sbjct 388160 TTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTC 388219 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| || | || || ||||| ||| || ||||| |||||||| Sbjct 388220 TTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGT 388279 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| |||||||| || ||||| |||||| Sbjct 388280 CTTTCCTGTTAGAGTTTTGACGAAAATCTGCATA 388313 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 |||||||| | ||| | ||||| || ||||| || || ||||| | | | | | || Sbjct 387639 CTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCG 387698 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||| || ||||| | |||||||| || || || ||| || || ||||| Sbjct 387699 TCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTA 387758 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||| ||| |||||| | || || ||||| | || || || | || ||| Sbjct 387759 TCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATG 387818 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| || |||||||| || ||||| |||||| Sbjct 387819 GTTTTACCGGTAAGAGTTTTAACGAAAATCTGCATA 387854 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || ||| | ||| ||||| | || || || || || |||||||||||| Sbjct 388542 CCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGAC 388601 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||||| || || | |||||||| || || ||| |||| Sbjct 388602 AAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGA 388661 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || ||||||| |||||| | || || ||||| | ||| || Sbjct 388662 ATACCCTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACT 388721 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || ||||| || |||| || || ||||| || ||||| Sbjct 388722 TCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 388768 >seq2987 Length=818656 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || || || ||||| || ||||| ||||| || || ||| |||| | ||| Sbjct 733781 AAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCATCT 733722 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||||||| ||| | |||| |||||| || || ||||| ||||||||||| Sbjct 733721 TCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTGTCC 733662 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||||| |||| || || ||| | ||| || || | || |||||| Sbjct 733661 TGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATGGTT 733602 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || ||||| || || || ||||| Sbjct 733601 TTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570 Score = 114 bits (126), Expect = 9e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| || ||||| ||||| || || ||| |||| | ||||| | |||| Sbjct 733544 TGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAAAGAGTTCTGCCATCTTCCAGTTGT 733485 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| || || || ||||| ||||||||||| |||||| Sbjct 733484 TTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGAATACCTTCTTTGTCCTGGATTTTG 733425 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||| |||| || || || | ||| || || | || ||||| || || || Sbjct 733424 GCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACTTCGAGCGTGATGGTCTTGCCCGTA 733365 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||||||| |||||||| Sbjct 733364 AGAGTCTTTACAAAGATTTGCAT 733342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362165825401230