Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3008 107 2e-18 seq2987 87.8 1e-12 >seq3008 Length=1134530 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | || ||| || | |||| ||||| || || |||||||||||||| | Sbjct 388086 CCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAA 388145 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| || |||||||| || ||| | || | | |||||||||| || Sbjct 388146 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 388205 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-T 18993 | |||||||||||| |||||| || || | | | ||||| | ||| || Sbjct 388206 ATGCCCTCTTTGTCTTGAATTTTTGCCTTAACGTTCTCAATTGTATC-TGATGCTTCGAC 388264 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||||| || ||||||| ||||||||| ||||| ||||| Sbjct 388265 TTCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || | |||||| |||| ||||| || || |||||||| ||||| ||||| | Sbjct 387625 TTCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAG 387684 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || |||| ||||| || || || ||| |||| | | ||||||||| | Sbjct 387685 ACAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTG 387744 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||||| || ||| || |||||| | | | |||||| || ||| Sbjct 387745 GGATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGA 387804 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || ||||||||||| || | |||||| || ||||| ||||| Sbjct 387805 CTTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| || | |||| ||||| ||||| ||||| || ||||||||||| | | Sbjct 388314 CCACCGCGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGAC 388373 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | || || || ||||| || ||| |||| | ||||||||||||| || Sbjct 388374 AAAGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGG 388433 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| |||||||| |||||| || || | ||| || || | || | Sbjct 388434 ATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACT 388493 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || ||||| || ||||| || ||||| || ||||| |||||| Sbjct 388494 TCCAACGTTATGGTCTTTCCTGTCAAGGTTTTAACGAAAATCTGCATT 388541 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||||||||||||||| || | | || | ||||| || || || || Sbjct 387201 GTAGATTCCTTTTGAATATTGTAGTCTGATAAAGTGCGTCCATCCTCGAGTTGCTTGCCT 387260 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| ||||| || ||||| || | ||||||||| || ||| || || Sbjct 387261 GCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCCTCTTTATCTTGAATCTTTGCCTTC 387320 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| || ||| ||| | ||||| || || |||||||||||| Sbjct 387321 ACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAATGTAATCGTCTTTCCTGTTAAAGTT 387380 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 387381 TTGACGAAAATCTGCAT 387397 >seq2987 Length=818656 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||| || ||||||||||| || || |||| | ||| || | || Sbjct 733781 AAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCATCT 733722 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 ||||| ||||| || || |||| || | |||||||| || | || |||||||| Sbjct 733721 TCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTGTCC 733662 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| |||||| | ||| || ||| || || ||||| || |||||| Sbjct 733661 TGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATGGTT 733602 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||||| | ||||| || || || |||||| Sbjct 733601 TTGCCTGTGAGTGTTTTCACGAAGATCTGCATT 733569 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | | | |||| ||| | || || ||||||||||| || || || | Sbjct 733570 TTCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTG 733511 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| || | || ||||| ||||| || || |||| || | ||||||||| | Sbjct 733510 AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAG 733451 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| ||||| |||||| | ||| || || || || Sbjct 733450 GAATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGA 733391 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| || ||||| || || || | ||| || ||||| ||||||||| Sbjct 733390 CTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414557490603820