Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3008 122 6e-23 >seq3008 Length=1134530 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 33158 AACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCA 33217 || |||| |||||| || || || ||||| ||||| |||||||||||| || | ||| Sbjct 387642 AAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCT 387701 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCG 33277 |||| |||||||||| ||| || ||||| ||||| || | || || || ||||| || Sbjct 387702 TCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCT 387761 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 |||| |||||| | | ||| || || | | || ||||| || || ||| Sbjct 387762 TGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTT 387821 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||||||||| |||||||| ||||| Sbjct 387822 TTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || || || || || |||||||||||||||||| || | || || Sbjct 388332 ACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCA 388391 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| |||||| ||| || || | ||||| |||| || ||||||||||| || | Sbjct 388392 AGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTGA 388451 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | || ||||| | || ||| |||| ||||| || Sbjct 388452 ATTTTTGCC---TTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTC 388508 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||||| |||||||| ||||| Sbjct 388509 TTTCCTGTCAAGGTTTTAACGAAAATCTGCAT 388540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318765828140940