Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3008 118 8e-22 seq2987 82.4 5e-11 >seq3008 Length=1134530 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || |||||||| || ||| ||||||||||| || |||||| | || || Sbjct 387411 CTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCA 387470 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | ||||||||| ||||| ||||| || ||||| ||| |||| | |||||||| Sbjct 387471 TCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTG 387530 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| |||||| |||||| | | | |||||||| | ||| || || | ||| || Sbjct 387531 TCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATG 387590 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || |||| ||| || || || || ||||| Sbjct 387591 GTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTC 43965 ||||| |||| ||| | ||| || ||||| ||||||||||| | || || ||| | Sbjct 387639 CTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTG-CGCCC 387697 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 || |||| ||| ||||| ||||| ||||| || ||||| || | || | ||| ||||| Sbjct 387698 GTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTT 387757 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 |||| ||| || ||| || | ||| |||||| | | ||| || || | ||| || Sbjct 387758 ATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGAT 387817 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||||| | ||| || || || || ||||| Sbjct 387818 GGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || || ||||| || ||| |||||||||||||| ||||| | || || Sbjct 387870 CTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCA 387929 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | ||||||||| ||||| ||||| || || || ||| |||| | ||||| || Sbjct 387930 TCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTG 387989 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || ||||||| ||||| | | | || |||| | ||| || || | || || Sbjct 387990 TCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATG 388049 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || | ||| |||||||| |||||||| Sbjct 388050 GTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | |||||||| ||||| ||||| || ||||| || | || | ||| |||| Sbjct 388612 CATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTT 388671 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| |||||| ||| || | ||| |||||| | | || || || | || | Sbjct 388672 TATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTA 388731 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| || || || ||||||||||| || ||||| Sbjct 388732 TAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 388768 >seq2987 Length=818656 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATC 43968 || |||||||| || ||| || ||||| || |||||||| | | | || | || Sbjct 733325 AAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAAAGAGTTCTGC-CGTC 733267 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||||||||| || || || |||| || ||||| || |||| | || |||||||| Sbjct 733266 TTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATC 733207 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | || || |||||| | | | ||| || | | ||||| || | || || || Sbjct 733206 TTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATAGT 733147 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCT 44130 ||| || || | ||||||||||| ||||||||| || ||| Sbjct 733146 TTTTCCAGTGAGGGTCTTCACAAAGATTTGCATGATGAATCT 733105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354764498728440