Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 118 8e-22
seq2987 82.4 5e-11
>seq3008
Length=1134530
Score = 118 bits (130), Expect = 8e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966
|| || |||||||| || ||| ||||||||||| || |||||| | || ||
Sbjct 387411 CTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGACCA 387470
Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026
|| || | ||||||||| ||||| ||||| || ||||| ||| |||| | ||||||||
Sbjct 387471 TCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTG 387530
Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086
||| |||||| |||||| | | | |||||||| | ||| || || | ||| ||
Sbjct 387531 TCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATG 387590
Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| || |||| ||| || || || || |||||
Sbjct 387591 GTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625
Score = 107 bits (118), Expect = 1e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTC 43965
||||| |||| ||| | ||| || ||||| ||||||||||| | || || ||| |
Sbjct 387639 CTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTG-CGCCC 387697
Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025
|| |||| ||| ||||| ||||| ||||| || ||||| || | || | ||| |||||
Sbjct 387698 GTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTT 387757
Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085
|||| ||| || ||| || | ||| |||||| | | ||| || || | ||| ||
Sbjct 387758 ATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGAT 387817
Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||||||||| | ||| || || || || |||||
Sbjct 387818 GGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 95.1 bits (104), Expect = 9e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966
|| || || ||||| || ||| |||||||||||||| ||||| | || ||
Sbjct 387870 CTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCA 387929
Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026
|| || | ||||||||| ||||| ||||| || || || ||| |||| | ||||| ||
Sbjct 387930 TCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTG 387989
Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086
|| ||||||| ||||| | | | || |||| | ||| || || | || ||
Sbjct 387990 TCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATG 388049
Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| || || | ||| |||||||| ||||||||
Sbjct 388050 GTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084
Score = 86.0 bits (94), Expect = 4e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| || | |||||||| ||||| ||||| || ||||| || | || | ||| ||||
Sbjct 388612 CATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTT 388671
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
||||| |||||| ||| || | ||| |||||| | | || || || | || |
Sbjct 388672 TATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTA 388731
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| ||||| || || || ||||||||||| || |||||
Sbjct 388732 TAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 388768
>seq2987
Length=818656
Score = 82.4 bits (90), Expect = 5e-11
Identities = 153/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATC 43968
|| |||||||| || ||| || ||||| || |||||||| | | | || | ||
Sbjct 733325 AAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAAAGAGTTCTGC-CGTC 733267
Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028
||||||||||| || || || |||| || ||||| || |||| | || ||||||||
Sbjct 733266 TTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATC 733207
Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088
| || || |||||| | | | ||| || | | ||||| || | || || ||
Sbjct 733206 TTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATAGT 733147
Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCT 44130
||| || || | ||||||||||| ||||||||| || |||
Sbjct 733146 TTTTCCAGTGAGGGTCTTCACAAAGATTTGCATGATGAATCT 733105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354764498728440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |