Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3008 96.9 3e-15 seq2838 87.8 2e-12 seq2987 84.2 2e-11 >seq3008 Length=1134530 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| |||||||| || || ||||||||||| |||||||||||| Sbjct 387399 CCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAG 387458 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | |||||| || ||| | || | | ||| ||||| || Sbjct 387459 AGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGG 387518 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| ||| || | | | || ||| | || | Sbjct 387519 ATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACT 387578 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | || |||||||| || || | |||||||| ||||| |||||| Sbjct 387579 TCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | |||||||| || || |||||||||||| || ||| | |||||| Sbjct 388560 ACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTCA 388619 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| |||| | | ||| |||||| || | || ||||| || | Sbjct 388620 AGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTGA 388679 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | ||| || ||| || ||| ||| | || || ||||| Sbjct 388680 ATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTTC 388739 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || ||||| || || ||||| || |||||| Sbjct 388740 CCAGTCAATGTCTTCACAAAGATCTGCATT 388769 >seq2838 Length=268038 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| || | |||||| || |||| |||||||| |||||||| || |||||| | Sbjct 122094 CCTCCTCGCAAGCGCAACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGAC 122035 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC 20094 | ||| || |||||| ||||||||||| ||| | || | | ||| ||||| Sbjct 122034 AAAGTCCTACCATCTTCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATC 121982 >seq2987 Length=818656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | ||| |||||||| ||||| ||||| ||||| ||||| ||||| Sbjct 733342 TTCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTG 733283 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||||||||||| || || | || || | ||| ||||| | Sbjct 733282 AAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAG 733223 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| ||||| || || || ||| || | | | || || || |||| Sbjct 733222 GAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCA 733163 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| || ||||| || || | || || ||||| |||||||| Sbjct 733162 CCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| || ||||| ||||| ||||| ||||| || || Sbjct 733570 TTCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTG 733511 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||||| ||||||||| || |||| || | ||| ||||| | Sbjct 733510 AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAG 733451 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| ||||| ||| || | | | | || || ||| Sbjct 733450 GAATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGA 733391 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | || ||||| ||||| || | || || ||||| ||||||||| Sbjct 733390 CTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419571705431430