Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2987 183 7e-41 seq3008 172 1e-37 seq2856 172 1e-37 seq2581 114 3e-20 seq2780 84.2 5e-11 >seq2987 Length=818656 Score = 183 bits (202), Expect = 7e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | ||||| || || | ||| ||||| || ||||| |||||||| Sbjct 733571 ATTCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCT 733512 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||| |||||||| || || ||||| || | ||| ||||||||| Sbjct 733511 GAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGA 733452 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| || || |||||||||||||| | || || || ||| Sbjct 733451 GGAATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCG 733392 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||| || ||||| || |||||||| || |||||| Sbjct 733391 ACTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341 Score = 165 bits (182), Expect = 2e-35 Identities = 188/251 (75%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 104309 GAGTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGAT 104368 |||||||| || | || | ||||| |||| || | | || | ||| | ||| ||| Sbjct 733363 GAGTCTTTACAAAGATT-TGCATTCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGAT 733305 Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || || ||||| || || |||||||| |||||||| | |||||| ||||| || Sbjct 733304 TCCTTTTGGATGTTATAATCTGAAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAG 733245 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| ||||||||||| || || |||||||| || ||||| ||||| |||||| Sbjct 733244 ATCAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTT 733185 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 |||| || || || ||| ||||| || || ||||| || ||||| || || || ||| Sbjct 733184 TCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACA 733125 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 733124 AAGATTTGCAT 733114 Score = 163 bits (180), Expect = 7e-35 Identities = 155/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| |||||||| || |||||||| || ||||| |||||||| || Sbjct 733766 GTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCG 733707 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | || ||||||||||| || |||||||| ||||| || || |||||| Sbjct 733706 GCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTGTCCTGGATTTTGGCTTTT 733647 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || ||| || ||| || || ||||| || || || || || |||||| Sbjct 733646 ACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATGGTTTTGCCTGTGAGTGTT 733587 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 733586 TTCACGAAGATCTGCATT 733569 >seq3008 Length=1134530 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||||| | || ||||| || || ||||| || || |||||||| ||| Sbjct 387624 ATTCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCA 387683 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | |||||||| ||||| |||||||||||||| | | ||| |||||||| Sbjct 387684 GACAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGT 387743 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || |||||||| |||||||| ||||||||||| || | ||||| || || Sbjct 387744 GGGATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCG 387803 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| ||||| ||||| || || |||||||| Sbjct 387804 ACTTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | || | ||| || ||||| | ||||||||| || |||||||| ||||| | Sbjct 387169 TTCCGCCCCGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTG 387228 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||| ||| | || || || ||||| || || |||||||| || || ||||||||||||| Sbjct 387229 ATAAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAG 387288 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || || |||||||| ||||||||||| || || || || | |||||| || || | Sbjct 387289 GAATGCCCTCTTTATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGA 387348 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || | |||||| ||||| || || | ||||| || || |||||||| Sbjct 387349 CTTCCAATGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 Score = 158 bits (174), Expect = 3e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || || || || | ||| || |||||||| ||||| || || || || Sbjct 388539 ATTCCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCG 388598 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | ||| ||||| || |||||||| |||||||| | | ||| ||||| || Sbjct 388599 GACAAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGT 388658 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || |||||||| ||||| || ||||||||||| || | ||||| || ||| Sbjct 388659 GGAATACCCTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCA 388718 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || || || || ||||| || ||||| | ||| || ||||| ||||||||| ||| Sbjct 388719 ACTTCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCATTGTGT 388773 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || || || | ||| || |||||||| ||||| ||||| || ||||| | ||| | | Sbjct 388323 AGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGA 388382 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| |||||||||||||||||||| | ||||| ||||| ||||| || |||||| Sbjct 388383 CCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCT 388442 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || ||||| ||||| || ||||| || | || || | ||| || || | || Sbjct 388443 TTGTCTTGAATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTT 388502 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || | ||||| || || ||||||||| Sbjct 388503 ATGGTCTTTCCTGTCAAGGTTTTAACGAAAATCTGCATT 388541 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | |||| ||| | || |||||||| |||||||| || || || || |||| | Sbjct 387867 AGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTTCGA 387926 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||||||||| ||||| || | | ||||||||| ||||| |||||||| Sbjct 387927 CCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCC 387986 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || |||||||| ||||| || || || || | || || | || || |||| || Sbjct 387987 TTGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTG 388046 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| ||||| || ||||| Sbjct 388047 ATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | || | ||| | || |||||||| ||||| || || || || || |||| | Sbjct 387408 AGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAGAGCGTTCGA 387467 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||||||||||||||| || | | ||| ||||| ||||| ||||||||| Sbjct 387468 CCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCT 387527 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || ||||| || ||||| ||||| || | ||||| | || || |||| || Sbjct 387528 TTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTG 387587 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || ||||| || || ||||||||| Sbjct 387588 ATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | |||||||||||||||||||| || || || || || | |||||||| Sbjct 388104 ACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTCTTCA 388163 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || |||||||| ||||| || | | ||| ||||| ||||| || || ||||| || ||| Sbjct 388164 AGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTGA 388223 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || ||||| || || || || | ||||| | ||| || |||| ||||| ||||| Sbjct 388224 ATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGTCTTT 388283 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || |||||||| Sbjct 388284 CCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 >seq2856 Length=4748033 Score = 172 bits (190), Expect = 1e-37 Identities = 152/190 (80%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| || |||||||| || || ||||| | || ||||| || || || ||||| || | Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| |||||||| || ||||| ||||||||||| ||||| ||||||||||||| Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 ||| ||||| | ||||||||| || |||||||||||||| || || |||||||| | Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 1620883 AAATCTGCAT 1620874 >seq2581 Length=3237177 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 ||||| ||| || || | ||||| ||||| | | |||||| || ||||| ||||| || Sbjct 740483 TTTATCTCTCATGTTTTGGCGTTCTTTGCTGCTTCTGATGGAATTGTTAATGAAAACTTA 740542 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 | || | ||| ||||||| ||| | || | ||||| | |||||||| || ||||| Sbjct 740543 ATTGAAAGATTCAGTCAAGAAGTAAAAATCGCAGAAGCACGCTGTTTTTATGGTTTCCAA 740602 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || || |||||||||||||||||||| ||||| ||| | || || ||||| || Sbjct 740603 ATCGCCATAGAAAATATTCATTCAGAAATGTATTCACTACTCATTGAAACTTACAT 740658 >seq2780 Length=557517 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 65819 ATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGA 65878 ||| || | |||||||||||| ||||||||||||||| | || ||||||||||||| Sbjct 124154 ATAATCAGCATCTATAACACCTGCACCTACATCTATATGATTTTTCCACGCTAATCCAGA 124095 Query 65879 TCGGGGAGCTATTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTAAATAC 65938 ||| || || | ||| ||||| || ||||||| ||| ||||||||| || Sbjct 124094 TCGTGGTGCAACTCTCCCATATGTACCAAAAGGAACTTCTATTTGCAAATCAGTCTTAAC 124035 Query 65939 CAATTCTTTGTCCATG 65954 ||||| ||| ||||| Sbjct 124034 TAATTCCTTG-CCATG 124020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151353700555240