Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 107 2e-18
>seq3008
Length=1134530
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| ||||| | |||||| || | ||| | ||| |||||||| || || ||||||| |
Sbjct 387627 CCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGAC 387686
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
|| ||| |||| ||||| ||||| || | |||| |||||||||||||| ||
Sbjct 387687 AAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGG 387746
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| || || || || ||| || || | | | | || ||||| | ||||||
Sbjct 387747 ATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACT 387806
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || |||||||||||||| |||||||| || |||||||||||
Sbjct 387807 TCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||| | ||| || ||||||||||| ||| || |||||||| |||||||| |
Sbjct 387857 ACCACCGCGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGA 387916
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| ||| | || || || || || ||| | | || |||||||| |||||| ||
Sbjct 387917 GAGCGTTCGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGG 387976
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||||||| |||||| ||||| | | || || || | | |||
Sbjct 387977 GATTCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGAC 388036
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || |||||||| || || ||||||||||||||||| |||||
Sbjct 388037 TTCTAAAGTGATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||| | ||| || || ||||| || ||| || ||||||||||||||||| |
Sbjct 387398 ACCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGA 387457
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| ||| | || || || || || || | | || ||||||||||||||| ||
Sbjct 387458 GAGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGG 387517
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||| ||||| |||||| |||| | | | || ||||| | | |||
Sbjct 387518 GATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAAC 387577
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || |||||||| || || |||||||| || |||||||||||
Sbjct 387578 TTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625
Score = 89.7 bits (98), Expect = 4e-13
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||||||||| | || ||| |||||||| || || || || ||||| |||||||| |
Sbjct 388085 ACCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGA 388144
Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
|| ||| || |||| || ||||| || ||| | | || ||||||||||||||| |
Sbjct 388145 -AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAG 388203
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | || ||||| |||||| ||| | | | || ||||| | | || ||
Sbjct 388204 GGATGCCCTCTTTGTCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTG-ATGCTTCG 388262
Query 48678 TC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || | || ||||| || || || |||||||| || |||||||||||
Sbjct 388263 ACTTCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421235643983030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |