Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2981 141 1e-28 seq2907 96.9 4e-15 >seq2981 Length=868677 Score = 141 bits (156), Expect = 1e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 7176 ATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTC 7235 ||| || || ||||| |||||||||||||| ||||||| ||| |||||||||||||| || Sbjct 860376 ATACTTGGCACCAAAGTGTCTCCATTGAAATCCATAAACAGGTCCTAAATCACCTTCCTC 860435 Query 7236 ACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATATG 7295 | || | | || || | | |||| || ||| |||| ||||||| ||||| Sbjct 860436 TCTATCAGTGAAGCCACAAGAGTCTAAAAAAGCCCGTGAACCATTTCCATCCCAGATATG 860495 Query 7296 TACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTC 7355 ||| ||| | || ||| | | |||||||| |||||| ||| |||||||| | ||| Sbjct 860496 AACACCTTTATCTGCTAATTCTTTGGAATTTGTCGATCCTCTAATAAACCATAATAATTC 860555 Query 7356 TTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAATGTACTTA 7411 ||| |||| | | ||||| |||| |||||| || || | ||| ||||| ||| || Sbjct 860556 TTCAACTACTGCTCGCCAGAACACTCTTTTAGTGGTCAGTAATGGGAAAATACCTA 860611 Score = 89.7 bits (98), Expect = 6e-13 Identities = 164/236 (69%), Gaps = 16/236 (7%) Strand=Plus/Plus Query 6918 TAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATA 6977 ||||| ||| || |||| |||||| || || ||||| ||||||||||| ||| || || Sbjct 860015 TAATGAATACGATGCTATATTAAACGGCACCCCTAAACCCATATCTGCACTTCTCTGGTA 860074 Query 6978 ACATTGACAAGATAAAATATTGTCTATAGC----ATAAAATTGACACAATACATGACATG 7033 | || ||||| || || || || ||||||||| || | || |||| Sbjct 860075 AAGCTGTGCGGATAA----TTCTCCATTGCTCACATAAAATTGGACTAAGGCGTGGCATG 860130 Query 7034 GAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTC 7090 |||| || ||| ||| || |||| |||||||||||||| ||||| |||||||| Sbjct 860131 GAGGCAAT---GCCATTTCTGGGATGTCAGTTGGATTCCAAGCAGACATTATAATACGTC 860187 Query 7091 TATCATTTGGATTTGTTTTTAATTTTGT-TATAATTATTTGTAATTGATCTATACC 7145 | |||| ||| | ||| | ||||| |||| | || ||| |||||||| || Sbjct 860188 TGTCATCAGGA-GAATGTTTCACTTTGTGAATAACTTCTTTTAACTGATCTATTCC 860242 >seq2907 Length=4756786 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 164783 TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATA 164842 |||| ||| |||||||||||||||||||| | || || || ||||| || ||||||| Sbjct 3023719 TTCACGATACAGTGGTTAATCAGTTGCTTGCAAAGATCGACGGTGTCGAGCAGTTAAATA 3023778 Query 164843 ATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGAC 164902 ||||| | || | |||||||| || || ||| | ||||| || |||||||| ||| Sbjct 3023779 ATATTCTTGTTATTGGTATGACTAATAGAAGGGATATGATTGACGAAGCTTTATTGAGAC 3023838 Query 164903 CTGGTCGATTAGA 164915 |||| |||| || Sbjct 3023839 CTGGCAGATTGGA 3023851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595849431348000