Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq2384 183 2e-41 >seq2384 Length=91102 Score = 183 bits (202), Expect = 2e-41 Identities = 355/516 (69%), Gaps = 20/516 (4%) Strand=Plus/Minus Query 3632 TTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAA 3691 || || || || || ||||| ||||||||||||||||||||| | || | || |||||| Sbjct 83034 TTCGCAGATGTGTGTGCTGGCCCAGGTGGTTTCAGTGAATATGTTTTGTCAAGGAAGAAA 82975 Query 3692 TGGAATATCAAAGGTTATGGTATGACGTTACGCGaaa--aaaaTGATTTTCAACTGAACA 3749 ||| | |||||| | ||| | || || | ||| ||||||| ||| | || | Sbjct 82974 TGGCACGCCAAAGGATTTGGATTCACTTT--GAAAAATGAAAATGACTTTGCATTGGATG 82917 Query 3750 GATTTTACGATA-ACTTTTCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGAT--- 3805 || | | | || | || |||| || || || | |||||| | ||| || Sbjct 82916 AGTTCTTTGCTGGACCATGCG-AAACATTTCATCCTTTTTATGGATC---TAAAGAGAAC 82861 Query 3806 GGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATGATT----ATGAAAGA 3861 || || | | || || | ||||| | ||| ||| |||| ||| |||||| | Sbjct 82860 GGAGATGTATTTGATCCAAAGAATCA-AGAGGAATTT---AAATCATTGGTGATGAAACA 82805 Query 3862 TACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCA 3921 ||| | | ||||||||||||||||||| | || || || ||||| || || ||||| Sbjct 82804 TACATGTGATAGAGGTGTACATTTTATGATGTCAGATGGAGGATTCTCTGTGGAAGGTCA 82745 Query 3922 AGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATT 3981 |||||| || ||||| || |||| || || | ||||||||||||||| | | ||||| Sbjct 82744 AGAAAACATACAAGAGATTCTATCAAAGCAGCTATATTTGTGTCAATGTCTGGTAGCATT 82685 Query 3982 GATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTT 4041 ||||| || || ||||| || | ||| | ||| | || || | || |||||||| Sbjct 82684 AATGATAGTAAGATCAGGTGGACACTTTGTAACTAAACTGTTTGACCTGTTCACACCTTT 82625 Query 4042 TAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACC 4101 ||| ||||| | || || | ||||| |||| ||| | || ||||||||||||| || Sbjct 82624 TAGCGCTGGACTTGTCTACCTAATGTACAGATGTTTCGACAGTGTTTGTATTTTCAAGCC 82565 Query 4102 ACATTCATCGCGACCGGCCAATTCTGAAAGATATTT 4137 || || |||| |||||||| ||| | ||||| Sbjct 82564 TAATAGTTCTAGACCAGCCAATTCAGAACGTTATTT 82529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276543387394090