Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2907 122 5e-23 seq2939 120 2e-22 seq2756 118 6e-22 seq2864 114 7e-21 >seq2907 Length=4756786 Score = 122 bits (134), Expect = 5e-23 Identities = 96/115 (83%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAA-------AAATCAAATTGGCCCATGAAAGGATCGAACCTTCG 11481 ||||||| |||| |||| ||| || ||||||||||| |||||||||| || Sbjct 2933905 AAATATAAAATTTTTAAATAGAGACAAAAAAAGTTGGCCCATGAGGGGATCGAACCCGCG 2933846 Query 11482 ACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGAC 11535 ||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 2933845 ACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCAGTCGAC 2933791 >seq2939 Length=1430158 Score = 120 bits (132), Expect = 2e-22 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 389954 AAAAAAAAAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 389895 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 389894 CTCTAACCAACTGAGCTAATGGGCC 389870 >seq2756 Length=976025 Score = 118 bits (130), Expect = 6e-22 Identities = 82/93 (88%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||| ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 636707 AAGAAAAAA--AAAGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 636650 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||||| |||||||||||||||||||| ||| Sbjct 636649 GACGCTCTAACCAACTGAGCTAATGGGCCTTCG 636617 Score = 118 bits (130), Expect = 6e-22 Identities = 79/88 (90%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 655273 AAAAAAAAAAATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 655214 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 655213 ACGCTCTAACCAACTGAGCTAATGGGCC 655186 >seq2864 Length=721139 Score = 114 bits (126), Expect = 7e-21 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 11437 AATTAAT-AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 |||||| |||||| ||| ||||| |||| |||||||||| |||||||||||||||| Sbjct 20871 AATTAAAGAAAAAAATAAAGTGGCCTATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 20812 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||||||||||| |||| Sbjct 20811 AGCACGACGCTCTAACCAACTGAGCTAATAGGCC 20778 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261481543620280