Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2917 176 7e-40 seq2927 170 3e-38 >seq2917 Length=2120606 Score = 176 bits (194), Expect = 7e-40 Identities = 183/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | |||||| ||||||||||| || ||||||||||| || || Sbjct 813857 GCGAAGCGTCATAGGAAGGTTCTTCGTGATAACATCCAGGGTATCACCAAGCCGGCCATT 813916 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || ||||| || ||||||||| | ||||| ||| |||||||||| | | Sbjct 813917 CGTCGTTTGGCACGACGTGGCGGTGTCAAGCGTATATCTGGCTTGATCTATGAAGAAACT 813976 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||| | ||||| | | ||| || | ||||||| || ||| || || Sbjct 813977 CGCGGTGTGCTGAAAGTGTTCCTTGAAAACGTCATTCGTGATGCTGTCACCTACACTGAA 814036 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| ||||||| |||| || || |||||||||||||| Sbjct 814037 CACGCAAAGAGGAAGACCGTCACTGCCATGGACGTCGTATACGCCCTGAAACGTCAAGGC 814096 >seq2927 Length=4912583 Score = 170 bits (188), Expect = 3e-38 Identities = 198/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| | ||||| ||||||||||| || |||||||| || || ||| Sbjct 2730970 GCGAAGAGACATCGCAAAGTACTTCGCGATAACATCCAGGGCATCACCAAACCGGCCATC 2730911 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| ||||| || ||||||||| | || || || | || ||||||| Sbjct 2730910 CGTCGTCTTGCTCGCCGTGGCGGCGTCAAGCGTATTTCCGGTTTAATTTACGAAGAGACA 2730851 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| |||| || ||| |||||| | ||| || | |||||||||| Sbjct 2730850 CGTGGTGTACTGAAAGTCTTTCTTGAGAACGTTATTCGTGACGCGGTAACCTATACCGAG 2730791 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||||| ||||| || || | ||||| | |||||||| |||| |||||||| Sbjct 2730790 CATGCCAAACGGAAGACCGTAACTGCTATGGACGTGGTCTATGCTCTGAAGCGTCAAGGA 2730731 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| || ||||| Sbjct 2730730 AGAACCCTGTACGGTTTCGGCGGTTAA 2730704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072429649790