Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2917 176 7e-40
seq2927 170 3e-38
>seq2917
Length=2120606
Score = 176 bits (194), Expect = 7e-40
Identities = 183/240 (76%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||| | | |||||| ||||||||||| || ||||||||||| || ||
Sbjct 813857 GCGAAGCGTCATAGGAAGGTTCTTCGTGATAACATCCAGGGTATCACCAAGCCGGCCATT 813916
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||| |||| || ||||| || ||||||||| | ||||| ||| |||||||||| | |
Sbjct 813917 CGTCGTTTGGCACGACGTGGCGGTGTCAAGCGTATATCTGGCTTGATCTATGAAGAAACT 813976
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| |||| | ||||| | | ||| || | ||||||| || ||| || ||
Sbjct 813977 CGCGGTGTGCTGAAAGTGTTCCTTGAAAACGTCATTCGTGATGCTGTCACCTACACTGAA 814036
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| ||||| ||||||| |||| || || ||||||||||||||
Sbjct 814037 CACGCAAAGAGGAAGACCGTCACTGCCATGGACGTCGTATACGCCCTGAAACGTCAAGGC 814096
>seq2927
Length=4912583
Score = 170 bits (188), Expect = 3e-38
Identities = 198/267 (74%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||| | ||||||| | ||||| ||||||||||| || |||||||| || || |||
Sbjct 2730970 GCGAAGAGACATCGCAAAGTACTTCGCGATAACATCCAGGGCATCACCAAACCGGCCATC 2730911
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| ||||| ||||| || ||||||||| | || || || | || |||||||
Sbjct 2730910 CGTCGTCTTGCTCGCCGTGGCGGCGTCAAGCGTATTTCCGGTTTAATTTACGAAGAGACA 2730851
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| |||| |||| || ||| |||||| | ||| || | ||||||||||
Sbjct 2730850 CGTGGTGTACTGAAAGTCTTTCTTGAGAACGTTATTCGTGACGCGGTAACCTATACCGAG 2730791
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||||| ||||| || || | ||||| | |||||||| |||| ||||||||
Sbjct 2730790 CATGCCAAACGGAAGACCGTAACTGCTATGGACGTGGTCTATGCTCTGAAGCGTCAAGGA 2730731
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | || ||||| || |||||
Sbjct 2730730 AGAACCCTGTACGGTTTCGGCGGTTAA 2730704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79072429649790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |