Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2987 132 5e-26 seq3008 116 4e-21 >seq2987 Length=818656 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || |||||| | || || ||| | ||||| ||||| | ||| | Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| ||||| | || ||| || || ||||||||||| || ||||| ||||| Sbjct 733629 CGACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733688 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | || |||| || |||||||||||| ||||||| |||| | |||||||| Sbjct 733689 GCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAA 733748 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| ||||| || |||| |||| || ||||| | ||||| Sbjct 733749 CATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCGACTTCGGGGAGG 733796 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | |||||||| || | || || || | ||||| ||||| | ||| | Sbjct 733341 AATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTC 733400 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| ||||| | || ||| || || ||||||||||| || ||||| ||||| Sbjct 733401 TGACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733460 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | || |||| || |||||||||||| ||||||| |||| | |||||||| Sbjct 733461 GCAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAA 733520 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| ||||| || | || ||||| ||| | ||| ||||||||| Sbjct 733521 CATTCAAAAGGAATCCACACTTCACCTGGTACTGCGTCTTCGAGGAGGAA 733570 >seq3008 Length=1134530 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | || |||||| | ||||| | ||| | || || Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | ||||| ||| ||| ||||| ||||| || ||||| |||||| Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | | ||| |||||||||||||||| | ||| || || || || Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| ||| | ||| | || |||| ||| | || || Sbjct 387904 ATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAGGCTTCGCGGTGG 387858 Score = 111 bits (122), Expect = 2e-19 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| ||||| ||||| |||| || | ||| | || | Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | || || ||||||| || ||||| || || ||||| |||||| Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAA 387278 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 |||||||| |||| | ||||| |||||||| |||| | || | | | ||||| || Sbjct 387277 CAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATG-GACGCACTTTATCAGACTACAA 387219 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAAATATGATT 27007 |||||||| |||||||| | ||||| || || | ||| | || ||||| || | ||| Sbjct 387218 TATTCAAAAGGAATCTACACTTCATCTTGTGCTTCGTCTTCGGGGCGGAAATATTTAATT 387159 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| |||| || ||| | ||||| | ||| | || || Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || |||||| | |||||| || ||| ||||||||||| || ||||| ||||| Sbjct 387566 AGATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCA 387507 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | | || | | || |||||||| ||||||| | ||| || ||| || || Sbjct 387506 GCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAA 387447 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||||| ||| | ||| |||| |||| ||| | || || Sbjct 387446 CATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCTTCGCGGTGG 387399 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| || || ||||| | || || | ||| | ||| || Sbjct 388541 AATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATC 388482 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| |||||| | || || ||| ||| ||||||||||| || ||||| ||||| Sbjct 388481 AGACACAATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCA 388422 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || ||| | |||| | || |||||||| ||||||| | | | | || || || Sbjct 388421 GCAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACAA 388362 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || || || ||||||||| | ||| |||| || ||||| Sbjct 388361 TATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACT 388323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478644270661600