Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2581 282 3e-71
seq3008 138 8e-28
seq2587 136 3e-27
seq2976 125 5e-24
seq645 125 5e-24
seq2461 118 7e-22
seq2217 116 2e-21
seq2987 95.1 8e-15
>seq2581
Length=3237177
Score = 282 bits (312), Expect = 3e-71
Identities = 331/443 (75%), Gaps = 6/443 (1%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
||||||| | | ||||| ||||| ||||| ||||| || ||||||||||| ||||||
Sbjct 735551 ATGGGGAGCGTAAACGTCAATCGCAATGTCAGCGACGCATTTTACCGCTACAAGATGCCG 735610
Query 6222 CGCA-TCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACAT 6280
|| | |||| || ||||| ||||| ||||| ||||| || || || || |||||||||||
Sbjct 735611 CGGATTCTG-GCGAAGGTGGAGGGCAAGGGGAACGGCATCAAGACGGTGATTGTCAACAT 735669
Query 6281 GCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTG 6340
| || || || |||||| |||| || || ||||| |||||||| || || ||||| ||
Sbjct 735670 GGTGGACGTGGCGAAGGCGATCGGTCGTCCGGCCACATACCCGACCAAGTACTTCGGCTG 735729
Query 6341 CGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATC 6400
|||| | ||||| |||||||| || || ||| |||||||| |||||||||||||| ||
Sbjct 735730 CGAATTGGGCGCGCAGACGCAATTCGACTTCAAGAACGAGCGTTTCATCGTTAACGGTTC 735789
Query 6401 GCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTG 6460
||| | | | || |||||||| || || ||||| || || ||||| | || | ||
Sbjct 735790 GCACGATGCCACGAAACTGCAGGATTTGCTGGACGGTTTCATCCGCAAATACGTTTTATG 735849
Query 6461 TCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTC 6520
|| | ||||| || |||||||||||||| || | | | |||| || |||||
Sbjct 735850 TCCCGCTTGCGACAATCCGGAGACCGAGCTGATAATCAGTTCGAAGAAGGGTACGATCTC 735909
Query 6521 TCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCA--CACAAACTCAAC 6578
|| | ||||||||| |||||| | |||||| |||| | || ||||| || |||
Sbjct 735910 GCAAGTCTGCAAAGCCTGCGGTCATCATGGCCTCTTGGA--GAGCAATCACAAGCTGAAC 735967
Query 6579 ACCTTCATACTGAAGAATCCTCC 6601
|||| ||| |||||||||| ||
Sbjct 735968 ACCTACATCTTGAAGAATCCACC 735990
>seq3008
Length=1134530
Score = 138 bits (152), Expect = 8e-28
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||||||| | ||| ||||| || |||||||||||||||||| || | || ||
Sbjct 388332 ACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCA 388391
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||||||||| ||||| || | | || ||||| | |||| |||||||||||| |
Sbjct 388392 AGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTGA 388451
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|||||| ||| ||||||| || || ||| ||||||||| || || || || ||
Sbjct 388452 ATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTTT 388511
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| ||||||||||| ||||| ||||||||
Sbjct 388512 CCTGTCAAGGTTTTAACGAAAATCTGCAT 388540
Score = 125 bits (138), Expect = 5e-24
Identities = 168/233 (72%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | | ||| |||||||| |||||| || |||||||| |||||||| |
Sbjct 387397 TACCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGG 387456
Query 38149 ACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204
| | |||||| || || | ||||||||| ||||| || | || || |||||
Sbjct 387457 AGAG----CGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCC 387512
Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264
| |||| ||||||||||| |||||| || ||||||| || |||||||
Sbjct 387513 GGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCC 387572
Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||||||| || || ||||| || || | ||||| ||||| ||||||||
Sbjct 387573 TCAACTTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625
Score = 123 bits (136), Expect = 2e-23
Identities = 158/217 (73%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG-- 38162
||| || |||||||||||| || ||||||||||||||||| || | ||||||
Sbjct 387872 CAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGA----GCGTTCGAC 387927
Query 38163 --TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220
|| || | ||||||||||||||| || | || |||||||| | |||| ||||| |
Sbjct 387928 CATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCT 387987
Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280
||||| ||||||| ||| || |||| || || ||| || |||||||| || |
Sbjct 387988 TGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGA 388047
Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| ||||| || || | |||||||| || || |||||
Sbjct 388048 TGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084
Score = 114 bits (126), Expect = 9e-21
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | ||| | |||||| || ||||||||||||||||| || || ||| ||| |
Sbjct 387182 ACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGATAAAGTGCGTCC 387241
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || | ||| || || ||||| || || | ||||||||| | || | ||| |||||
Sbjct 387242 ATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCCTCTTT 387301
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|| ||| ||| |||||| |||| | ||||| | || ||||| ||||||||
Sbjct 387302 ATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAATGTAAT 387361
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || || ||||| ||||| ||||||||
Sbjct 387362 CGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397
Score = 113 bits (124), Expect = 3e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|| || || ||||| ||||| || || |||||||||||||| || | || ||
Sbjct 388098 CGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCG 388157
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | |||||||||||||| || | || || ||||| | |||| ||| ||||||
Sbjct 388158 TCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTG 388217
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
|| ||||||| ||| || |||| | |||||| ||| |||||||| |||||
Sbjct 388218 TCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATG 388277
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || | ||||| ||||| ||||||||
Sbjct 388278 GTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||||||| | ||| ||||| || || |||||||| |||||| || | || ||
Sbjct 388560 ACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTCA 388619
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| |||||||||||||| || | || || ||||||| || | || ||||| || |
Sbjct 388620 AGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTGA 388679
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
||||| || ||||||| | |||||| | ||||||||| | || ||||||||
Sbjct 388680 ATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTTC 388739
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| ||||| || ||||| || ||||||||
Sbjct 388740 CCAGTCAATGTCTTCACAAAGATCTGCAT 388768
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165
|| |||| ||| | |||| |||||||| ||||| |||||||||||| || ||||
Sbjct 387642 AAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCT 387701
Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225
|| | ||| ||||| ||||| || | || || ||||| | |||| || ||||| ||
Sbjct 387702 TCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCT 387761
Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285
||| || || ||||||| | |||||| | || ||||| | || || |||
Sbjct 387762 TGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTT 387821
Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || | ||||| ||||| ||||||||
Sbjct 387822 TTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
>seq2587
Length=99143
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 40011 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 40070
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 40071 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 40105
Score = 122 bits (134), Expect = 6e-23
Identities = 73/77 (95%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 25926 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATAGGTCTCGT 25985
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 25986 GGTCGTATTTAGCCTTA 26002
>seq2976
Length=29344
Score = 125 bits (138), Expect = 5e-24
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9305 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 9246
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 9245 GGTCGTATTTAGCCTTA 9229
>seq645
Length=1267
Score = 125 bits (138), Expect = 5e-24
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 412
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 411 GGTCGTATTTAGCCTTA 395
>seq2461
Length=67910
Score = 118 bits (130), Expect = 7e-22
Identities = 82/93 (88%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|| |||||||||||||| |||||||||||||||||||||||||| || || |||||
Sbjct 55648 AATCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAACTCGT 55707
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
|||||| |||||| |||||||||||||||||||
Sbjct 55708 TAATCCATTCATGTGCGTCACTAATTAGATGAC 55740
>seq2217
Length=28776
Score = 116 bits (128), Expect = 2e-21
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 2613 CTCTCTCTTCAAAGTTCTTTTAAACTTTCCCTCACGGTACTTGTTCCCTATCGGTCTCGT 2554
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 2553 GGTCGTATTTAGCCTTA 2537
>seq2987
Length=818656
Score = 95.1 bits (104), Expect = 8e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
||||| ||||| || || ||| ||||||||||| || || || || | | | |
Sbjct 733784 CGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCA 733725
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | |||||| ||||| || || || ||||| ||||| | || | |||||||||
Sbjct 733724 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTG 733665
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| ||||| || || || | || || || | ||| ||||| | ||| ||
Sbjct 733664 TCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATG 733605
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || | ||||||||||| ||||||||
Sbjct 733604 GTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334934831027930
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