Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2581 282 3e-71 seq3008 138 8e-28 seq2587 136 3e-27 seq2976 125 5e-24 seq645 125 5e-24 seq2461 118 7e-22 seq2217 116 2e-21 seq2987 95.1 8e-15 >seq2581 Length=3237177 Score = 282 bits (312), Expect = 3e-71 Identities = 331/443 (75%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||||| | | ||||| ||||| ||||| ||||| || ||||||||||| |||||| Sbjct 735551 ATGGGGAGCGTAAACGTCAATCGCAATGTCAGCGACGCATTTTACCGCTACAAGATGCCG 735610 Query 6222 CGCA-TCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACAT 6280 || | |||| || ||||| ||||| ||||| ||||| || || || || ||||||||||| Sbjct 735611 CGGATTCTG-GCGAAGGTGGAGGGCAAGGGGAACGGCATCAAGACGGTGATTGTCAACAT 735669 Query 6281 GCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTG 6340 | || || || |||||| |||| || || ||||| |||||||| || || ||||| || Sbjct 735670 GGTGGACGTGGCGAAGGCGATCGGTCGTCCGGCCACATACCCGACCAAGTACTTCGGCTG 735729 Query 6341 CGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATC 6400 |||| | ||||| |||||||| || || ||| |||||||| |||||||||||||| || Sbjct 735730 CGAATTGGGCGCGCAGACGCAATTCGACTTCAAGAACGAGCGTTTCATCGTTAACGGTTC 735789 Query 6401 GCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTG 6460 ||| | | | || |||||||| || || ||||| || || ||||| | || | || Sbjct 735790 GCACGATGCCACGAAACTGCAGGATTTGCTGGACGGTTTCATCCGCAAATACGTTTTATG 735849 Query 6461 TCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTC 6520 || | ||||| || |||||||||||||| || | | | |||| || ||||| Sbjct 735850 TCCCGCTTGCGACAATCCGGAGACCGAGCTGATAATCAGTTCGAAGAAGGGTACGATCTC 735909 Query 6521 TCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCA--CACAAACTCAAC 6578 || | ||||||||| |||||| | |||||| |||| | || ||||| || ||| Sbjct 735910 GCAAGTCTGCAAAGCCTGCGGTCATCATGGCCTCTTGGA--GAGCAATCACAAGCTGAAC 735967 Query 6579 ACCTTCATACTGAAGAATCCTCC 6601 |||| ||| |||||||||| || Sbjct 735968 ACCTACATCTTGAAGAATCCACC 735990 >seq3008 Length=1134530 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| | ||| ||||| || |||||||||||||||||| || | || || Sbjct 388332 ACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCA 388391 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||||||| ||||| || | | || ||||| | |||| |||||||||||| | Sbjct 388392 AGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTGA 388451 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 |||||| ||| ||||||| || || ||| ||||||||| || || || || || Sbjct 388452 ATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTTT 388511 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||||||||| ||||| |||||||| Sbjct 388512 CCTGTCAAGGTTTTAACGAAAATCTGCAT 388540 Score = 125 bits (138), Expect = 5e-24 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | | ||| |||||||| |||||| || |||||||| |||||||| | Sbjct 387397 TACCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGG 387456 Query 38149 ACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 | | |||||| || || | ||||||||| ||||| || | || || ||||| Sbjct 387457 AGAG----CGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCC 387512 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| ||||||||||| |||||| || ||||||| || ||||||| Sbjct 387513 GGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCC 387572 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||||||| || || ||||| || || | ||||| ||||| |||||||| Sbjct 387573 TCAACTTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 123 bits (136), Expect = 2e-23 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG-- 38162 ||| || |||||||||||| || ||||||||||||||||| || | |||||| Sbjct 387872 CAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGA----GCGTTCGAC 387927 Query 38163 --TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 || || | ||||||||||||||| || | || |||||||| | |||| ||||| | Sbjct 387928 CATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCTTCCT 387987 Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280 ||||| ||||||| ||| || |||| || || ||| || |||||||| || | Sbjct 387988 TGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAAGTGA 388047 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || | |||||||| || || ||||| Sbjct 388048 TGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||| | |||||| || ||||||||||||||||| || || ||| ||| | Sbjct 387182 ACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGATAAAGTGCGTCC 387241 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | ||| || || ||||| || || | ||||||||| | || | ||| ||||| Sbjct 387242 ATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGGAATGCCCTCTTT 387301 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || ||| ||| |||||| |||| | ||||| | || ||||| |||||||| Sbjct 387302 ATCTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAATGTAAT 387361 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || ||||| ||||| |||||||| Sbjct 387362 CGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 || || || ||||| ||||| || || |||||||||||||| || | || || Sbjct 388098 CGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCG 388157 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | |||||||||||||| || | || || ||||| | |||| ||| |||||| Sbjct 388158 TCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTG 388217 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || ||||||| ||| || |||| | |||||| ||| |||||||| ||||| Sbjct 388218 TCTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATG 388277 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | ||||| ||||| |||||||| Sbjct 388278 GTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| | ||| ||||| || || |||||||| |||||| || | || || Sbjct 388560 ACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCTTCA 388619 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||||||||| || | || || ||||||| || | || ||||| || | Sbjct 388620 AGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCTTGA 388679 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || ||||||| | |||||| | ||||||||| | || |||||||| Sbjct 388680 ATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTTTTC 388739 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || ||||| || |||||||| Sbjct 388740 CCAGTCAATGTCTTCACAAAGATCTGCAT 388768 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 || |||| ||| | |||| |||||||| ||||| |||||||||||| || |||| Sbjct 387642 AAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCT 387701 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || | ||| ||||| ||||| || | || || ||||| | |||| || ||||| || Sbjct 387702 TCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCT 387761 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || || ||||||| | |||||| | || ||||| | || || ||| Sbjct 387762 TGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTT 387821 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || | ||||| ||||| |||||||| Sbjct 387822 TTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 >seq2587 Length=99143 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 40011 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 40070 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 40071 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 40105 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 25926 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATAGGTCTCGT 25985 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 25986 GGTCGTATTTAGCCTTA 26002 >seq2976 Length=29344 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9305 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 9246 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 9245 GGTCGTATTTAGCCTTA 9229 >seq645 Length=1267 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 412 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 411 GGTCGTATTTAGCCTTA 395 >seq2461 Length=67910 Score = 118 bits (130), Expect = 7e-22 Identities = 82/93 (88%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || |||||||||||||| |||||||||||||||||||||||||| || || ||||| Sbjct 55648 AATCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAACTCGT 55707 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||| ||||||||||||||||||| Sbjct 55708 TAATCCATTCATGTGCGTCACTAATTAGATGAC 55740 >seq2217 Length=28776 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 2613 CTCTCTCTTCAAAGTTCTTTTAAACTTTCCCTCACGGTACTTGTTCCCTATCGGTCTCGT 2554 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 2553 GGTCGTATTTAGCCTTA 2537 >seq2987 Length=818656 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| ||||| || || ||| ||||||||||| || || || || | | | | Sbjct 733784 CGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCA 733725 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | |||||| ||||| || || || ||||| ||||| | || | ||||||||| Sbjct 733724 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTG 733665 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| ||||| || || || | || || || | ||| ||||| | ||| || Sbjct 733664 TCCTGGATTTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATG 733605 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | ||||||||||| |||||||| Sbjct 733604 GTTTTGCCTGTGAGTGTTTTCACGAAGATCTGCAT 733570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934831027930