Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq3007 118 1e-21
>seq3007
Length=2871884
Score = 118 bits (130), Expect = 1e-21
Identities = 192/274 (70%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498
||| || || ||||| || ||| | || | || |||||||| || || ||||| ||
Sbjct 1589961 AAATCACCTGGACATCTGTTGATTGTTGGTGCAGGCGTTAAATAACGTCGGTGAAGCATG 1589902
Query 63499 AGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557
||||| || ||| || || ||| || || || || |||||| || || || ||
Sbjct 1589901 CGTAAAGTATCGTTCGGATAAATAG-TTATATGTTTCTATAGCTTTCTCAATGTCGTTTT 1589843
Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617
|||||| || || || || | ||| |||||||| || |||||||| || ||| || |
Sbjct 1589842 CATGAATGCCAACAGCCACTCTCATCAACATGTGTTGTGGTCTTTCCACTATCGTGCCAT 1589783
Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63677
| |||||||| | ||| |||||| ||||||||||||| ||| || || ||||
Sbjct 1589782 TAATTTTCAATAGATAGCTCCTTTCCAGTGTTTTAAAACCAATATAATTATAATTGAAGT 1589723
Query 63678 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63711
||| || || || ||| | |||| ||||| ||
Sbjct 1589722 CTCTGTCATATATTATAGCAGAGTCCAGTTTTTC 1589689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633608001188000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |