Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3008 158 1e-33 seq2987 141 8e-29 seq2838 102 7e-17 seq2856 86.0 5e-12 >seq3008 Length=1134530 Score = 158 bits (174), Expect = 1e-33 Identities = 168/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || ||| ||||||| | ||||| ||| | || Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| |||||| ||| ||||| ||||| || || || || || Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAG-GACAAGGAAGGAATCCCTCCGGATCA 387966 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || |||||||| |||||| | ||||||| ||| || | |||||||| Sbjct 387965 ACAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAA 387906 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||||||||||||| || |||||||| | ||||| Sbjct 387905 TATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAGGCT 387867 Score = 143 bits (158), Expect = 2e-29 Identities = 186/252 (74%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 24979 AATTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCA 25038 ||||| |||| ||| |||||||| || ||||| ||||| ||||| || ||| | || | Sbjct 388784 AATTT-TACAGAAC---ACAATGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAA 388729 Query 25039 CAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACA 25095 | | ||||| || | ||||| ||||| ||| | || |||| |||| ||| || | Sbjct 388728 CTCTTGAAGTTGAAGCTTCTGATACTATTGAG--AATGTAAAAGCCAAAATTCAA-GATA 388672 Query 25096 AAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 |||| || |||||||| || || ||||| | ||||||||||| ||||| | ||||||| Sbjct 388671 AAGAGGGTATTCCACCCGATCAGCAGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATG 388612 Query 25156 ATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGC 25215 ||||||| || ||||||||| || || || ||||| || | ||||| || || || | Sbjct 388611 GTCGCACTTTGTCCGATTACAACATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGAC 388552 Query 25216 TAAGAGGAGGAA 25227 | | || |||| Sbjct 388551 TGCGTGGTGGAA 388540 Score = 140 bits (154), Expect = 3e-28 Identities = 166/222 (75%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || ||| | || || ||| ||||||| | ||||| ||| | || Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||||||| | || |||| |||| ||| ||||||||||| || || || || Sbjct 387566 AGATACTATCGAG--AATGTCAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCTCCGGA 387510 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || ||||| || |||||| | ||||||| ||| || | |||||| Sbjct 387509 TCAGCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTA 387450 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| ||||||||||||||||| || ||||| || | ||||| Sbjct 387449 CAACATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCT 387408 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || ||||| || || |||| || | ||||| || | || Sbjct 388541 AATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATC 388482 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| | ||| |||||| ||| ||||||||||| || || || || | Sbjct 388481 AGACACAATCGAGAATGTTAAGGCAAAAATTCAA-GACAAAGAAGGCATCCCTCCGGATC 388423 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | |||||||| || |||||| | ||||||| ||||||| || ||||||| Sbjct 388422 AGCAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACA 388363 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||| || || ||||| || | ||||| || || || || Sbjct 388362 ATATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACT 388323 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||| || || || | || ||| | ||||| ||| | ||| Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| |||| | ||| || ||||| || ||||| ||||| || Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAA-GATAAAGAGGGCATTCCTCCTGATCA 387279 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | |||||||| ||||| ||| | || |||| |||||| | || ||||| Sbjct 387278 ACAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAA 387219 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 ||||||||| ||||| || || ||| | ||||| | || | || |||||| Sbjct 387218 TATTCAAAAGGAATCTACACTTCATCTTGTGCTTCGTCTTCGGGGCGGAAAT 387167 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| | || || || |||| || | ||||| || | || Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| |||||| ||| |||||||| || || || || || || Sbjct 388252 GATACAATTGAGAACGTTAAGGCAAAAATTCAA-GACAAAGAGGGCATCCCTCCGGATCA 388194 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| ||||| | ||||| | ||||| | ||||||||| Sbjct 388193 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAA 388134 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| |||||||| || || |||||||| || |||| | ||||| Sbjct 388133 TATTCAGAAAGAATCTACTCTGCATTTAGTTTTACGGCTTCGCGGAGG 388086 >seq2987 Length=818656 Score = 141 bits (156), Expect = 8e-29 Identities = 173/233 (74%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||||||| | || || || ||||||| ||||||| || | || Sbjct 733341 AATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTC 733400 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| ||||| | || |||| |||| || ||||||||||| ||||| ||||| Sbjct 733401 TGACACGATCGAA--AATGTAAAAGCCAAAATCCAG-GACAAAGAAGGTATTCCTCCTGA 733457 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | ||||| |||||||||||| | ||||||| | ||| | || || Sbjct 733458 TCAGCAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTA 733517 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || |||||||| |||||||| || || | || || | || ||||||||| Sbjct 733518 TAACATTCAAAAGGAATCCACACTTCACCTGGTACTGCGTCTTCGAGGAGGAA 733570 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || | || || ||| |||||||| ||||||| || | || Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| ||||| || | |||| |||| || ||||||||||| ||||| |||| Sbjct 733629 CGACACGATCGAAAACGTAA---AAGCCAAAATCCAG-GACAAAGAAGGTATTCCTCCTG 733684 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || || | ||||| |||||||||||| | ||||||| | ||| | || | Sbjct 733685 ATCAGCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACT 733744 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 | || |||||||| ||||||||||| || || || Sbjct 733745 ATAACATTCAAAAGGAATCCACGCTCCACTTGGT 733778 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || ||| | ||||| | || ||||| | ||| Sbjct 733114 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCT 733173 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| |||| || ||| || ||||| || ||||| ||||| Sbjct 733174 GACACTATAGAAAATGTCA---AAGC-CAAGATCCAAGATAAAGAGGGCATTCCTCCTGA 733229 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || || |||||||| ||||| | | ||| | ||||| Sbjct 733230 TCAGCAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTA 733289 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| |||||||| || ||||| || | | || ||||||||| Sbjct 733290 TAACATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGGAA 733342 >seq2838 Length=268038 Score = 102 bits (112), Expect = 7e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| |||||||| || || ||||| | || ||||| ||||||||||||||||||| | | Sbjct 121969 AGGAATTCCACCAGATCAGCAGCGATTGATCTTTGCTGGCAAACAATTAGAAGATGGTAG 122028 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||| || |||||| ||||| ||||| ||||| ||| |||| |||||| Sbjct 122029 GACTTTGTCCGATTATAATATACAAAAGGAATCTACGTTACACTTAGTG 122077 >seq2856 Length=4748033 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || || ||||| || | || ||||| | || || |||| || || || Sbjct 1620870 AACCATGCAGATTTTCGTAAAAACCCTCACGGGTAAGACTATTACCCTCGAGGTAGAATC 1620929 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||| || ||||| || | || |||| || | || || ||||| || |||||||| Sbjct 1620930 GTCGGATACTATAGAA--AATGTAAAAGCCAAGATACAG-GATAAAGAGGGAATTCCACC 1620986 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||| || ||||| |||| || || ||||| || | ||||||| || ||| | || Sbjct 1620987 TGATCAGCAGCGACTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGTACTCTTTCAGA 1621046 Query 25172 TTACAATATTCAAAAAG 25188 ||| ||||| ||||||| Sbjct 1621047 TTATAATATCCAAAAAG 1621063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433311998009450