Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 158 1e-33
seq2987 141 8e-29
seq2838 102 7e-17
seq2856 86.0 5e-12
>seq3008
Length=1134530
Score = 158 bits (174), Expect = 1e-33
Identities = 168/219 (77%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || ||| | || || ||| ||||||| | ||||| ||| | ||
Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| |||||| | ||| |||||| ||| ||||| ||||| || || || || ||
Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAG-GACAAGGAAGGAATCCCTCCGGATCA 387966
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || |||||||| |||||| | ||||||| ||| || | ||||||||
Sbjct 387965 ACAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAA 387906
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||||||||||||||||| || |||||||| | |||||
Sbjct 387905 TATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAGGCT 387867
Score = 143 bits (158), Expect = 2e-29
Identities = 186/252 (74%), Gaps = 10/252 (4%)
Strand=Plus/Minus
Query 24979 AATTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCA 25038
||||| |||| ||| |||||||| || ||||| ||||| ||||| || ||| | || |
Sbjct 388784 AATTT-TACAGAAC---ACAATGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAA 388729
Query 25039 CAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACA 25095
| | ||||| || | ||||| ||||| ||| | || |||| |||| ||| || |
Sbjct 388728 CTCTTGAAGTTGAAGCTTCTGATACTATTGAG--AATGTAAAAGCCAAAATTCAA-GATA 388672
Query 25096 AAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155
|||| || |||||||| || || ||||| | ||||||||||| ||||| | |||||||
Sbjct 388671 AAGAGGGTATTCCACCCGATCAGCAGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATG 388612
Query 25156 ATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGC 25215
||||||| || ||||||||| || || || ||||| || | ||||| || || || |
Sbjct 388611 GTCGCACTTTGTCCGATTACAACATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGAC 388552
Query 25216 TAAGAGGAGGAA 25227
| | || ||||
Sbjct 388551 TGCGTGGTGGAA 388540
Score = 140 bits (154), Expect = 3e-28
Identities = 166/222 (75%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || || ||| | || || ||| ||||||| | ||||| ||| | ||
Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| ||||||||| | || |||| |||| ||| ||||||||||| || || || ||
Sbjct 387566 AGATACTATCGAG--AATGTCAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCTCCGGA 387510
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| | || ||||| || |||||| | ||||||| ||| || | ||||||
Sbjct 387509 TCAGCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTA 387450
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
||| ||||||||||||||||| || ||||| || | |||||
Sbjct 387449 CAACATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCT 387408
Score = 123 bits (136), Expect = 2e-23
Identities = 161/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || || || ||||| || || |||| || | ||||| || | ||
Sbjct 388541 AATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATC 388482
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| |||||| | ||| |||||| ||| ||||||||||| || || || || |
Sbjct 388481 AGACACAATCGAGAATGTTAAGGCAAAAATTCAA-GACAAAGAAGGCATCCCTCCGGATC 388423
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| | | |||||||| || |||||| | ||||||| ||||||| || |||||||
Sbjct 388422 AGCAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACA 388363
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||| || || ||||| || | ||||| || || || ||
Sbjct 388362 ATATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACT 388323
Score = 118 bits (130), Expect = 9e-22
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||||| || || || | || ||| | ||||| ||| | |||
Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| ||||| |||| | ||| || ||||| || ||||| ||||| ||
Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAA-GATAAAGAGGGCATTCCTCCTGATCA 387279
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | |||||||| ||||| ||| | || |||| |||||| | || |||||
Sbjct 387278 ACAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAA 387219
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229
||||||||| ||||| || || ||| | ||||| | || | || ||||||
Sbjct 387218 TATTCAAAAGGAATCTACACTTCATCTTGTGCTTCGTCTTCGGGGCGGAAAT 387167
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||| | || || || |||| || | ||||| || | ||
Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| | ||| |||||| ||| |||||||| || || || || || ||
Sbjct 388252 GATACAATTGAGAACGTTAAGGCAAAAATTCAA-GACAAAGAGGGCATCCCTCCGGATCA 388194
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || |||||||| ||||| | ||||| | ||||| | |||||||||
Sbjct 388193 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAA 388134
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||| |||||||| || || |||||||| || |||| | |||||
Sbjct 388133 TATTCAGAAAGAATCTACTCTGCATTTAGTTTTACGGCTTCGCGGAGG 388086
>seq2987
Length=818656
Score = 141 bits (156), Expect = 8e-29
Identities = 173/233 (74%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| |||||||||||| | || || || ||||||| ||||||| || | ||
Sbjct 733341 AATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTC 733400
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||| ||||| | || |||| |||| || ||||||||||| ||||| |||||
Sbjct 733401 TGACACGATCGAA--AATGTAAAAGCCAAAATCCAG-GACAAAGAAGGTATTCCTCCTGA 733457
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| | ||||| |||||||||||| | ||||||| | ||| | || ||
Sbjct 733458 TCAGCAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTA 733517
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| |||||||| |||||||| || || | || || | || |||||||||
Sbjct 733518 TAACATTCAAAAGGAATCCACACTTCACCTGGTACTGCGTCTTCGAGGAGGAA 733570
Score = 118 bits (130), Expect = 9e-22
Identities = 156/214 (73%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || || || | || || ||| |||||||| ||||||| || | ||
Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
||||| ||||| || | |||| |||| || ||||||||||| ||||| ||||
Sbjct 733629 CGACACGATCGAAAACGTAA---AAGCCAAAATCCAG-GACAAAGAAGGTATTCCTCCTG 733684
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| || || || | ||||| |||||||||||| | ||||||| | ||| | || |
Sbjct 733685 ATCAGCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACT 733744
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207
| || |||||||| ||||||||||| || || ||
Sbjct 733745 ATAACATTCAAAAGGAATCCACGCTCCACTTGGT 733778
Score = 107 bits (118), Expect = 2e-18
Identities = 165/233 (71%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | || || ||| | ||||| | || ||||| | |||
Sbjct 733114 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCT 733173
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||||| || |||| |||| || ||| || ||||| || ||||| |||||
Sbjct 733174 GACACTATAGAAAATGTCA---AAGC-CAAGATCCAAGATAAAGAGGGCATTCCTCCTGA 733229
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| | || || || || |||||||| ||||| | | ||| | |||||
Sbjct 733230 TCAGCAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTA 733289
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || ||||| |||||||| || ||||| || | | || |||||||||
Sbjct 733290 TAACATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGGAA 733342
>seq2838
Length=268038
Score = 102 bits (112), Expect = 7e-17
Identities = 88/109 (81%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||| |||||||| || || ||||| | || ||||| ||||||||||||||||||| | |
Sbjct 121969 AGGAATTCCACCAGATCAGCAGCGATTGATCTTTGCTGGCAAACAATTAGAAGATGGTAG 122028
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208
||| || |||||| ||||| ||||| ||||| ||| |||| ||||||
Sbjct 122029 GACTTTGTCCGATTATAATATACAAAAGGAATCTACGTTACACTTAGTG 122077
>seq2856
Length=4748033
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/197 (71%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
||| ||||| || || ||||| || | || ||||| | || || |||| || || ||
Sbjct 1620870 AACCATGCAGATTTTCGTAAAAACCCTCACGGGTAAGACTATTACCCTCGAGGTAGAATC 1620929
Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
||| || ||||| || | || |||| || | || || ||||| || ||||||||
Sbjct 1620930 GTCGGATACTATAGAA--AATGTAAAAGCCAAGATACAG-GATAAAGAGGGAATTCCACC 1620986
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
||| || ||||| |||| || || ||||| || | ||||||| || ||| | ||
Sbjct 1620987 TGATCAGCAGCGACTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGTACTCTTTCAGA 1621046
Query 25172 TTACAATATTCAAAAAG 25188
||| ||||| |||||||
Sbjct 1621047 TTATAATATCCAAAAAG 1621063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433311998009450
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