Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2856 113 5e-20 seq2581 111 2e-19 >seq2856 Length=4748033 Score = 113 bits (124), Expect = 5e-20 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 4154112 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 4154171 Query 126327 GTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||| | ||||| Sbjct 4154172 GTTCGAACCCCACACTTAGCAAAT 4154195 Score = 113 bits (124), Expect = 5e-20 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||| Sbjct 4413485 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGTATGGGAGCGTGG 4413426 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| |||| | || || Sbjct 4413425 GTTCGAACCCCACACCTGGCAAACTTTTTTT 4413395 >seq2581 Length=3237177 Score = 111 bits (122), Expect = 2e-19 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | || ||||||||||| ||||| | ||| || || || |||||| Sbjct 740658 ATGTAAGTTTCAATGAGTAGTGAATACATTTCTGAATGAATATTTTCTATGGCGATTTGG 740599 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || ||||| | ||||| | ||| | ||||||||| ||||| || | | Sbjct 740598 AAACCATAAAAACAGCGTGCTTCTGCGATTTTTACTTCTTGACTGAATCTTTCAATTAAG 740539 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||| || || ||||| || || ||||| || ||||| | ||| ||||| | | Sbjct 740538 TTTTCATTAACAATTCCATCAGAAGCAGCAAAGAACGCCAAAACATGAGAGATAAAGTAT 740479 Query 93542 TTCTCATCATCTTTAAGCTT---ATCCCAATC 93570 |||| ||| || ||||| |||||||| Sbjct 740478 CTCTCGTCAGAATTGAGCTTTTCTTCCCAATC 740447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556839708897200