Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 154 1e-32
seq2987 132 4e-26
>seq3008
Length=1134530
Score = 154 bits (170), Expect = 1e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| |||||| | || || ||||| ||||| | ||||| || | |
Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | |||| ||||||||| |||||||| || || || || ||||||
Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || |||||||| ||||| | || ||| || || |||| ||||||||
Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||||||||| | |||||||||||| | | ||||| |||
Sbjct 387904 ATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAGGCTTCGCGGTGGT 387857
Score = 152 bits (168), Expect = 4e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || || || || ||||| | ||||||||||| ||| | |
Sbjct 388768 ATGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAAGCTTCT 388709
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| || ||||||||||||||||||||
Sbjct 388708 GATACTATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCCGATCAG 388649
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || |||||||| |||||| | || ||| ||||| | ||||||||||||
Sbjct 388648 CAGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGATTACAAC 388589
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || ||||| || | ||||| ||| | || |||| || ||
Sbjct 388588 ATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGTGGTGG 388542
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || |||||| |||| || ||||| |||| | ||||| || | |
Sbjct 387625 ATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATCA 387566
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || ||||| |||||||||||||| || || || || || |||||
Sbjct 387565 GATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCAG 387506
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || ||||| || ||||| | || ||| || || ||||||||||||||
Sbjct 387505 CAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAAC 387446
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||||||||| | ||||| |||||| | | ||||| |||
Sbjct 387445 ATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCTTCGCGGTGGT 387398
Score = 145 bits (160), Expect = 6e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || |||||| |||| || || || | || | ||||| ||| | |
Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | | || ||||||||||||||| ||||| || || || |||||
Sbjct 388252 GATACAATTGAGAACGTTAAGGCAAAAATTCAAGACAAAGAGGGCATCCCTCCGGATCAG 388193
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || |||||||| |||||| | || || |||||| | |||||||||||
Sbjct 388192 CAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAAT 388133
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| |||||||| || | ||||||||||| || | |||||||||
Sbjct 388132 ATTCAGAAAGAATCTACTCTGCATTTAGTTTTACGGCTTCGCGGAGGT 388085
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| ||||||||| | ||||||||||| |||| || ||||| || | |
Sbjct 387853 ATGCAGATTTTCGTTAAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCT 387794
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| || |||||||| || |||||||| ||||| |||||
Sbjct 387793 GATACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAG 387734
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || ||||| || || || | || || ||||| | || ||||| ||
Sbjct 387733 CAGCGTTTGATTTTTGCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATAAT 387674
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTT 22430
|| ||||| |||||||| | ||| | |||||
Sbjct 387673 ATCCAAAAGGAATCCACTTTGCATCTGGTTTT 387642
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || ||||||||||| || || ||| | || | ||||| || | |
Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | || ||| |||||||| || ||||| ||||| || ||||||
Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAA 387278
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | || || ||||| ||||| || | |||||| ||||| | || || |||||
Sbjct 387277 CAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAAT 387218
Query 22399 ATTCAAAAAGAATCCAC 22415
|||||||| ||||| ||
Sbjct 387217 ATTCAAAAGGAATCTAC 387201
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| |||||||| || || || || || | || | ||||| ||| | |
Sbjct 388540 ATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATCA 388481
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || | || ||||||||||||||| || || || || || |||||
Sbjct 388480 GACACAATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 388421
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||| || ||||| | || ||| ||||| | || ||||||||
Sbjct 388420 CAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACAAT 388361
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || ||||| || | ||||| ||| | || ||||||| |||
Sbjct 388360 ATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTGCGCGGTGGT 388313
>seq2987
Length=818656
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || ||||| | || || ||||| |||| || ||||| ||| | ||
Sbjct 733570 ATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTCC 733629
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | | ||| ||||| || ||||| || |||||||| || |||||
Sbjct 733630 GACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCAG 733689
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||||| || || ||||||||||| | || ||| | | || | || || || |||
Sbjct 733690 CAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAAC 733749
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||||| |||||||| | || || ||||||||| | || ||||||
Sbjct 733750 ATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCGACTTCGGGGAGGT 733797
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || ||| | || || || || |||| || ||||| ||| | |
Sbjct 733342 ATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTCT 733401
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || | ||| ||||| || ||||| || |||||||| || |||||
Sbjct 733402 GACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCAG 733461
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || ||||||||||| | || ||| | | || | || || || |||
Sbjct 733462 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAAC 733521
Query 22399 ATTCAAAAAGAATCCAC 22415
|||||||| ||||||||
Sbjct 733522 ATTCAAAAGGAATCCAC 733538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419712500231950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |