Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2575 95.1 2e-14
seq2851 93.3 9e-14
seq2965 91.5 3e-13
seq2907 91.5 3e-13
seq2760 91.5 3e-13
seq2834 89.7 1e-12
>seq2575
Length=834412
Score = 95.1 bits (104), Expect = 2e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 26010 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 25951
Query 142563 CCCCACATCGGGCAGAA 142579
|||||| | |||| |||
Sbjct 25950 CCCCACGTTGGGCGGAA 25934
>seq2851
Length=1908893
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 70996 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 71055
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 71056 GCCCCACGTTGGGC 71069
>seq2965
Length=965997
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 964755 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 964696
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 964695 CCCCACGTTGGGC 964683
>seq2907
Length=4756786
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 3901790 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3901731
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 3901730 CCCCACGTTGGGC 3901718
>seq2760
Length=1610929
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1192165 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1192106
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 1192105 CCCCACGTTGGGC 1192093
>seq2834
Length=1595048
Score = 89.7 bits (98), Expect = 1e-12
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109
|| ||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||||
Sbjct 402892 CAAGTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCG 402833
Query 142110 ACCCCCGCCAGAGACGCCAGGA 142131
| |||| |||| || | || ||
Sbjct 402832 ATCCCCACCAGGGATGGCACGA 402811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027796897448230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |