Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_008953.1
Length=3935
Score E
Sequences producing significant alignments: (Bits) Value
seq2539 80.6 7e-12
>seq2539
Length=232649
Score = 80.6 bits (88), Expect = 7e-12
Identities = 112/157 (71%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425
|||||| || |||||||| ||| | || ||| | | | || | ||| || |||||| |
Sbjct 48042 ATGTACATTCCACAAATATGGTGCGTCCGGCACGGTACAGAAGTTCGACGGTCTCTGCGT 48101
Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGT 3485
|| ||| ||| | |||||||||||||| ||| | ||||||||||| ||||| | |
Sbjct 48102 GCTGCCGCTCAACATCGTCAACGAGAAGATTTACGTCTTCCTCTGGTTTTGGTTTATCAT 48161
Query 3486 GCTAGCCATCATCAGCGGTATCGTTGTTCTGTACCGC 3522
|| || ||| ||||| | | | |||||||||
Sbjct 48162 CCTGTCCGCCATGAGCGGCTTAAGTCTGCTGTACCGC 48198
Score = 77.0 bits (84), Expect = 8e-11
Identities = 92/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 3373 TTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCG 3432
|| ||||| |||||| | || ||||| | | | |||| || ||||| || |||
Sbjct 77247 TTCCACAAGTACGGTGCCTCCGGCTCGATACAGCAACACGACTCCCTTTGCATACTGCCG 77306
Query 3433 GAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCC 3492
|||| | ||||||||||||| ||||| ||| ||||||||||||||| | | || |||
Sbjct 77307 CTGAACATCGTCAACGAGAAGACGTACATCTTCATCTGGTTCTGGTTCTTCATACTGGCC 77366
Query 3493 ATCAT 3497
||||
Sbjct 77367 CTCAT 77371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 12479586405000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |