Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq2539 80.6 7e-12 >seq2539 Length=232649 Score = 80.6 bits (88), Expect = 7e-12 Identities = 112/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 |||||| || |||||||| ||| | || ||| | | | || | ||| || |||||| | Sbjct 48042 ATGTACATTCCACAAATATGGTGCGTCCGGCACGGTACAGAAGTTCGACGGTCTCTGCGT 48101 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGT 3485 || ||| ||| | |||||||||||||| ||| | ||||||||||| ||||| | | Sbjct 48102 GCTGCCGCTCAACATCGTCAACGAGAAGATTTACGTCTTCCTCTGGTTTTGGTTTATCAT 48161 Query 3486 GCTAGCCATCATCAGCGGTATCGTTGTTCTGTACCGC 3522 || || ||| ||||| | | | ||||||||| Sbjct 48162 CCTGTCCGCCATGAGCGGCTTAAGTCTGCTGTACCGC 48198 Score = 77.0 bits (84), Expect = 8e-11 Identities = 92/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 3373 TTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCG 3432 || ||||| |||||| | || ||||| | | | |||| || ||||| || ||| Sbjct 77247 TTCCACAAGTACGGTGCCTCCGGCTCGATACAGCAACACGACTCCCTTTGCATACTGCCG 77306 Query 3433 GAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCC 3492 |||| | ||||||||||||| ||||| ||| ||||||||||||||| | | || ||| Sbjct 77307 CTGAACATCGTCAACGAGAAGACGTACATCTTCATCTGGTTCTGGTTCTTCATACTGGCC 77366 Query 3493 ATCAT 3497 |||| Sbjct 77367 CTCAT 77371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479586405000