Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2997 104 2e-17 seq2976 98.7 8e-16 seq3008 95.1 1e-14 seq2587 95.1 1e-14 seq702 93.3 3e-14 >seq2997 Length=66827 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 21849 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 21908 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||||||| || ||||| Sbjct 21909 CCATAACTGATTTAATGAGCCATTCGTGGTTTCACCTTAA 21948 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 21849 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 21908 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||||||| || ||||| Sbjct 21909 CCATAACTGATTTAATGAGCCATTCGTGGTTTCACCTTAA 21948 >seq2976 Length=29344 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 2850 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 2791 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| | |||||| Sbjct 2790 CCATAACTGATTTACTGAGCCATTCGCGGTTTTATCTTAA 2751 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 2850 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 2791 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| | |||||| Sbjct 2790 CCATAACTGATTTACTGAGCCATTCGCGGTTTTATCTTAA 2751 >seq3008 Length=1134530 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||||| | || | ||| || || || |||||||| |||||||| | Sbjct 388085 ACCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGA 388144 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || |||| || | || || |||||||| |||| |||||||||||| | Sbjct 388145 -AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAG 388203 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || ||||||||| ||||||| ||||| | ||| | |||| | | |||| Sbjct 388204 GGATGCCCTCTTTGTCTTGAATTTTTGCCTTAA-CGTTCTCAATTGTATCTGATGCTTCG 388262 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||| || || ||||| ||||| ||||| || || || ||||| Sbjct 388263 ACTTCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33919 ACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGTCC 33978 |||||||| | ||| ||||| || || || ||||| | ||| ||| |||| ||| Sbjct 387645 ACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCTTCC 387704 Query 33979 AATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATA 34038 | |||||| || ||||| |||| ||||||||||| || | | |||||| | | | Sbjct 387705 AGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTAT-CTTG 387763 Query 34039 ATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTTT 34097 | | || |||| ||| | | |||||| ||| ||| ||| | ||| || ||||| Sbjct 387764 AATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTTTT 387823 Query 34098 TCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || ||||| || || || ||||| Sbjct 387824 ACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 >seq2587 Length=99143 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | | |||||| ||| Sbjct 29650 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTGCAATCTAATGAA 29709 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 29710 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 29749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | | |||||| ||| Sbjct 29650 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTGCAATCTAATGAA 29709 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 29710 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 29749 >seq702 Length=1035 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/101 (83%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATT-ACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGA 114388 |||||||| ||||||||||| ||||| ||||||||||||| || | || |||||| || Sbjct 387 CATGTATTAGCTCTAGAATTTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGA 446 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||| ||||||| || ||||||||||| ||| || ||||| Sbjct 447 ACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 487 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/101 (83%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATT-ACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGA 115585 |||||||| ||||||||||| ||||| ||||||||||||| || | || |||||| || Sbjct 387 CATGTATTAGCTCTAGAATTTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGA 446 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||| ||||||| || ||||||||||| ||| || ||||| Sbjct 447 ACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397047737230060