Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 159 8e-34
seq2856 154 3e-32
seq2987 152 1e-31
>seq3008
Length=1134530
Score = 159 bits (176), Expect = 8e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || || | || | ||| | ||| ||||||||| || || || |||| |
Sbjct 387399 CCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAG 387458
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
||||| || || ||||| | ||||||||| || ||||||| |||||| ||| |||
Sbjct 387459 AGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGG 387518
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||||||||| || || ||||| ||||| || || || |||| ||| | || |||
Sbjct 387519 ATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACT 387578
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| | |||||| || ||||| || ||||| |||||||| |||||||||
Sbjct 387579 TCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626
Score = 159 bits (176), Expect = 8e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
||||||||| || || | || ||||| | ||| ||| |||||||||||||| || |
Sbjct 387626 TCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGA 387685
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
| ||||| |||||||| | ||| ||||| || || |||| |||||| ||| | |||
Sbjct 387686 CAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGG 387745
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
||| || |||||||| || || || ||||| || || || |||| ||| || || ||
Sbjct 387746 GATACCCTCTTTATCTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGAC 387805
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| |||||||| || || ||||| ||||| || ||||| ||||||||
Sbjct 387806 TTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || || | || | ||||| ||| ||||||||| ||||| || || | |
Sbjct 387858 CCACCGCGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAG 387917
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
||||| || || ||||| | ||||||||| || ||||||| |||||||||| |||
Sbjct 387918 AGCGTTCGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGG 387977
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| || ||||| ||||| || || ||||| || || | || | || |||
Sbjct 387978 ATTCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACT 388037
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| || || || || ||||| || || || || |||||
Sbjct 388038 TCTAAAGTGATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084
>seq2856
Length=4748033
Score = 154 bits (170), Expect = 3e-32
Identities = 148/190 (78%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343
|||||||||||||||| || | || || ||||| ||||| | || || || |||||||
Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004
Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403
| || ||||| ||| | ||| ||||| ||||||||||| || || ||||| || ||||
Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944
Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
|||||| ||| ||||||||| ||||| || || ||||| || || || || || ||||
Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884
Query 288464 ATATCTGCAT 288473
| ||||||||
Sbjct 1620883 AAATCTGCAT 1620874
>seq2987
Length=818656
Score = 152 bits (168), Expect = 1e-31
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
||| || || || | ||||| || |||| ||| ||| ||||| || |||||||| |
Sbjct 733569 TCCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGA 733510
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| || | || ||||| | |||||| || ||||| ||||||||||| ||| | ||
Sbjct 733509 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGG 733450
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| |||||||| ||||||||||| ||||| || ||||| || | || | ||| ||
Sbjct 733449 AATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGAC 733390
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|||||||||||| ||||| || || |||||||| || || || ||||||
Sbjct 733389 TTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341
Score = 138 bits (152), Expect = 3e-27
Identities = 150/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 288276 CGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCC 288335
|||| ||| ||||| || |||||||| | || || | || ||||| | |||||| ||
Sbjct 733767 CGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCC 733708
Query 288336 TGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTT 288395
||||| |||||||| || ||| | || || |||||||| ||||||||||| |||||
Sbjct 733707 GGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTGTCCTGGATTTTGGCTTT 733648
Query 288396 CACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455
|||||||| || | ||| | ||| |||||||| ||||| || || || || || ||
Sbjct 733647 TACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATGGTTTTGCCTGTGAGTGT 733588
Query 288456 CTTGACGAATATCTGCATT 288474
|| ||||| |||||||||
Sbjct 733587 TTTCACGAAGATCTGCATT 733569
Score = 132 bits (146), Expect = 1e-25
Identities = 147/196 (75%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| ||||| || | || || | |||||||| |||||||| || |||||
Sbjct 733305 TTCCTTTTGGATGTTATAATCTGAAAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAA 733246
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||||||||||| ||| | || || || |||||||| ||||| || ||||| || ||
Sbjct 733245 GATCAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCTTGGATCTTGGCTTTGACATT 733186
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|||||||| || | ||| || || || ||||| || || || || || ||||| ||
Sbjct 733185 TTCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCAC 733126
Query 288462 GAATATCTGCATTATG 288477
|| || ||||| |||
Sbjct 733125 AAAGATTTGCATGATG 733110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179608603604340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |