Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3008 143 3e-29 seq2987 123 2e-23 seq2856 98.7 1e-15 seq3007 82.4 8e-11 >seq3008 Length=1134530 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || |||||||| ||||| |||||||| | | ||||| |||||||| Sbjct 388104 ACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTCTTCA 388163 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||| || |||||| | || | |||||||| || ||||| || || ||||| ||||| Sbjct 388164 AGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTGA 388223 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 |||||| ||| || ||| | |||||| || || ||||||| || | |||||| Sbjct 388224 ATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGTCTTT 388283 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | |||||| |||||||| ||||| Sbjct 388284 CCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || | || | ||| | || ||||||||||||||||||||||| | Sbjct 387398 ACCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGA 387457 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || | |||||||| || || || ||| | || | |||||||| || ||||| Sbjct 387458 GAGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGG 387517 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||||||||| ||||| | |||| ||||| ||| ||| | ||||| || || | Sbjct 387518 GATTCCTTCTTTGTCTTG-AATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAA 387576 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| || | ||| || || || | |||||| |||||||| |||||| Sbjct 387577 CTTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCATT 387626 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || | |||| ||||| || |||||||||||||| |||||||||| Sbjct 387857 ACCACCGCGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGA 387916 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || | ||||| || || || |||||| | || | ||||| || || ||||| Sbjct 387917 GAGCGTTCGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGG 387976 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || || || |||||| ||| || ||| | ||| || || || || Sbjct 387977 GATTCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGAC 388036 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||| | ||| || || || | |||||| || ||||||||||| Sbjct 388037 TTCTAAAGTGATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| ||| || || | ||| | || ||||| || || ||||||||||| | Sbjct 388542 CCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGAC 388601 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||||||||| || |||||| |||| | |||||||| ||||| ||| Sbjct 388602 AAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGA 388661 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| ||||| |||||| ||| | |||||| || || ||| Sbjct 388662 ATACCCTCTTTATCTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACT 388721 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||||| || || || ||||| || || || || || |||||| Sbjct 388722 TCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCATT 388769 >seq2987 Length=818656 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||| ||||||||||| || |||| | || | | ||| Sbjct 733553 AGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAAAGAGTTCTGCCATCT 733494 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || |||||||| |||| || |||||||| || |||||||| |||||||| || Sbjct 733493 TCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGAATACCTTCTTTGTCC 733434 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| || | || ||| || || ||||| | || | |||| Sbjct 733433 TGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACTTCGAGCGTGATGGTC 733374 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | ||| ||||| || ||||||||| Sbjct 733373 TTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||| ||||| ||||||||||| || || | | || | | ||||| || || ||||| Sbjct 733767 CGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCC 733708 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| |||| || || ||||| || |||||||| |||||||| || || ||||| || Sbjct 733707 GGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTGTCCTGGATTTTGGCTTT 733648 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || || || || ||||| | || | ||| ||||| || | || Sbjct 733647 TACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATGGTTTTGCCTGTGAGTGT 733588 Query 64426 TTTTACGAAAATTTGCATT 64444 ||| ||||| || |||||| Sbjct 733587 TTTCACGAAGATCTGCATT 733569 >seq2856 Length=4748033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| || || ||||||| | || || | ||||| ||||||||||| || | | Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | || |||||||| || || |||||||| ||||| || ||||| || |||||| | Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944 Query 64374 CCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 | | ||||| || || || || || | || | ||||| || || | |||||||| Sbjct 1620943 CTATAGTATC--CGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTAC 1620886 Query 64432 GAAAATTTGCAT 64443 |||||| ||||| Sbjct 1620885 GAAAATCTGCAT 1620874 >seq3007 Length=2871884 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 154032 AAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCG 154091 || || |||| ||||||||| | ||| || | |||||| ||| | | ||||| |||||| Sbjct 1591652 AATTCCCCGGACAATACGCGTCTCACGTAAATATTGCTCGTGTATGCCTCGATGGATTCG 1591593 Query 154092 TTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTT 154151 ||||| || | || || || || | || || |||||| || | || | || ||| Sbjct 1591592 TTGTTTCCGAGAATCTGCGCCGTGGAAGCCGTCGGCATAGGTGCTATTAAAAGCGAATTT 1591533 Query 154152 CGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTG-CCCAATTCCACAAGTTGGTAGG 154210 | || || || | ||| || | | ||| || || |||||| |||||| | || || Sbjct 1591532 CTCACTCCATGCTCTGCGAT-CTCTGCTTTCAACTTGTCCCAATCCCACAAATCTGTCGG 1591474 Query 154211 TTGCACGTTCCACATGTCGTATTG 154234 | ||||||||||| || ||||| Sbjct 1591473 CTTGACGTTCCACATATCATATTG 1591450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499625875953200