Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3008 147 2e-30 seq2838 96.9 3e-15 seq2987 93.3 4e-14 seq2856 86.0 6e-12 >seq3008 Length=1134530 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | | ||| || ||||| | || || |||||||||||||||||||| Sbjct 387858 CCACCGCGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAG 387917 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| ||| || || |||||||| || ||||||| ||||| ||||| ||||| Sbjct 387918 AGCGTTCGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGG 387977 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| ||| || ||||| | |||| ||||| | |||||| Sbjct 387978 ATTCCTTCCTTGTCC-TGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGAC 388036 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||| |||||||| ||||| Sbjct 388037 TTCTAAAGTGATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTGCAT 388084 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | | ||| |||||||| | || || ||||||||||| ||||||||| Sbjct 387399 CCACCGCGAAGCCTCAAAACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGGAG 387458 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| ||| || || ||||||||||| ||||||| ||||||||||| ||||| Sbjct 387459 AGCGTTCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGG 387518 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || |||| | ||| ||| || |||| | |||| || || | ||| || Sbjct 387519 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAAC 387577 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||| || ||||||||||| Sbjct 387578 TTCTAACGTGATGGTTTTCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 129 bits (142), Expect = 6e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || || || ||||| | ||||| ||||| ||||||||||||||| Sbjct 388086 CCTCCGCGAAGCCGTAAAACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAA 388145 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||||||||| || ||||||| ||||||||||| ||||| Sbjct 388146 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGG 388205 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCG-TACTCTCGA 127064 |||||||| |||| | ||| ||| || ||| | | || | || || | | || |||| Sbjct 388206 ATGCCCTCTTTGT-CTTGAATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCT-TCGA 388263 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || || || |||||||| || ||||||||||| Sbjct 388264 CTTCTAACGTAATGGTCTTTCCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||||| | ||||| || || || ||||||||||| | Sbjct 388314 CCACCGCGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGAC 388373 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || ||||||||||| | ||||||| ||||||||| ||||| Sbjct 388374 AAAGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGG 388433 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCG-TACTCTCGA 127064 ||||| || |||| | ||| ||| || ||| | | |||| ||||| | | || || | Sbjct 388434 ATGCCTTCTTTGT-CTTGAATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCT-TCAA 388491 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || || |||| ||||| || ||||||||||| Sbjct 388492 CTTCCAACGTTATGGTCTTTCCTGTCAAGGTTTTAACGAAAATCTGCAT 388540 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||||| | ||||| || || || || ||||||||| Sbjct 388541 TCCACCACGCAGTCTGAGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGA 388600 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| ||| || ||||||||||| || | ||||| |||||||||||||| || Sbjct 388601 CAAAGTGCGACCATCTTCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGG 388660 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || ||||| || | | ||| ||| || || | | || | || || | | || | Sbjct 388661 AATACCCTCTTTAT-CTTGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAA 388719 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || |||| || || ||||| |||||||| Sbjct 388720 CTTCAAGAGTTATAGTTTTCCCAGTCAATGTCTTCACAAAGATCTGCAT 388768 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | | || |||| ||| | || || || ||||| ||||| ||||| Sbjct 387626 TCCACCGCGAAGCCTTAAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGA 387685 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| || || || || |||||||| | ||||| ||||||||||| || || Sbjct 387686 CAAAGTGCGCCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGG 387745 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || ||||| || | | ||| | | || || | | || | || || | | ||||| Sbjct 387746 GATACCCTCTTTAT-CTTGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGA 387804 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| ||||| |||||||| || ||||||||||| Sbjct 387805 CTTCCAGCGTGATGGTTTTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || | ||| | ||| | ||||| || |||||||||||||| || Sbjct 387170 TCCGCCCCGAAGACGAAGCACAAGATGAAGTGTAGATTCCTTTTGAATATTGTAGTCTGA 387229 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || || || || || || | |||| || || ||||| ||||| Sbjct 387230 TAAAGTGCGTCCATCCTCGAGTTGCTTGCCTGCAAAAATCAGTCTTTGTTGATCAGGAGG 387289 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||| || | | ||| | | || ||| | | || | ||| || | | ||||| Sbjct 387290 AATGCCCTCTTTAT-CTTGAATCTTTGCCTTCACGTTCTCAATGGTATCAGAAGCCTCGA 387348 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||| || || || | |||||| || ||||||||||| Sbjct 387349 CTTCCAATGTAATCGTCTTTCCTGTTAAAGTTTTGACGAAAATCTGCAT 387397 >seq2838 Length=268038 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || || || || |||||||| || |||| |||||| || ||||| ||||| |||||| Sbjct 122097 GCACCTCCTCGCAAGCGCAACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCG 122038 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | | ||| |||| ||||| ||||| ||||||||||||||||||| || Sbjct 122037 GACAAAGTCCTACCATCTTCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATCTGGT 121978 Query 127004 GGTATGCC 127011 || || || Sbjct 121977 GGAATTCC 121970 >seq2987 Length=818656 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || || ||||| || ||| | |||| ||||||||||| ||||| || || || || Sbjct 733497 ATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGAATACCTTCTTT 733438 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| |||||| || | | ||||| ||||| | | |||||||||| || | Sbjct 733437 GTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACTTCGAGCGTGAT 733378 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || ||||| |||||||| || ||||| Sbjct 733377 GGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | ||||| |||||||| | || || || ||||| || || ||||| Sbjct 733341 TCCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGA 733282 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | || || | ||||| |||||| |||||| ||||||||||| ||||| Sbjct 733281 AAGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGG 733222 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| || || ||| || |||| | ||| | ||||| | | || || Sbjct 733221 AATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCAC 733162 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||||| || || || || || ||||| || |||||| Sbjct 733161 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCATG 733113 >seq2856 Length=4748033 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| ||||| ||||| | || || ||| || ||||| || |||||| ||| Sbjct 1621063 CTTTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGA 1621004 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 | | |||||||||||| || || || ||||| || ||| || || || | | || Sbjct 1621003 TAAGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTT 1620944 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 | | || |||| || || |||| ||| | || || || || || |||||||| | Sbjct 1620943 CTATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGA 1620884 Query 127104 AAATCTGCATGG 127115 |||||||||||| Sbjct 1620883 AAATCTGCATGG 1620872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475482790407200