Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq2987 147 5e-30
seq3008 132 1e-25
seq2856 109 1e-18
>seq2987
Length=818656
Score = 147 bits (162), Expect = 5e-30
Identities = 166/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||| | ||| || ||||| || || || |||||||| | ||| ||||| | | |||
Sbjct 733563 TCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAAAGAGT 733504
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|| ||||||||||| || || |||||||| || ||||||||||| || ||| ||| ||
Sbjct 733503 TCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGAATACC 733444
Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586
|||| ||||| || ||| || || || ||||| ||||| | | ||| || || |
Sbjct 733443 TTCTTTGTCCTGGAT-TTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACTTCGA 733385
Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||| ||||| ||||| ||||| || ||||| |||||
Sbjct 733384 GCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTG 733345
Score = 131 bits (144), Expect = 4e-25
Identities = 162/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| || || | |||||| || || |||||||| | ||| ||||| | | |||
Sbjct 733790 CGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTT 733731
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|| ||||||||||| || || |||||||| || ||||| ||||| || ||| ||| |||
Sbjct 733730 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCT 733671
Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| ||||| || ||| || || ||| ||||| ||||| | | ||| || || |
Sbjct 733670 TCTTTGTCCTGGAT-TTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAG 733612
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || ||||| |||||||| || || ||
Sbjct 733611 TGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTG 733573
Score = 107 bits (118), Expect = 5e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||| | || || | ||||| || || |||||||||| ||| || || | | |||
Sbjct 733335 TCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAAAGAGT 733276
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|| || ||||||| || || || |||||||| ||||||||||| || ||| ||| ||
Sbjct 733275 TCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCC 733216
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| || || ||||| || || ||| | ||||| | | ||| || || |
Sbjct 733215 CTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACCTCAAG 733156
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || ||||| || |||||||| |||||
Sbjct 733155 GGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTG 733117
>seq3008
Length=1134530
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| |||| || | || ||||| || || ||||| | ||||| || | | ||
Sbjct 387864 CGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTT 387923
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||| || || |||||||| ||||| | |||||| || |||||| ||||||
Sbjct 387924 CGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCT 387983
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| |||||||| ||| ||| ||| |||| ||||||| || || || || ||
Sbjct 387984 TCCTTGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAA 388043
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || ||||||||||||||||||||
Sbjct 388044 GTGATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTG 388081
>seq2856
Length=4748033
Score = 109 bits (120), Expect = 1e-18
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501
||||||| || || || | | ||| | |||||||||||||||||| || ||||||||
Sbjct 1621061 TTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGATA 1621002
Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561
|| |||||||| || || |||||| ||| ||||| ||||| || || |||
Sbjct 1621001 AGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTTCT 1620942
Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621
| || || | | |||||| || | || || |||||||||||||| ||||| || |||
Sbjct 1620941 ATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGAAA 1620882
Query 199622 ATTTG 199626
|| ||
Sbjct 1620881 ATCTG 1620877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178875832053010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |