Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2987 147 5e-30 seq3008 132 1e-25 seq2856 109 1e-18 >seq2987 Length=818656 Score = 147 bits (162), Expect = 5e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || ||||| || || || |||||||| | ||| ||||| | | ||| Sbjct 733563 TCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAAAGAGT 733504 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||||||||| || || |||||||| || ||||||||||| || ||| ||| || Sbjct 733503 TCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGAATACC 733444 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| ||||| || ||| || || || ||||| ||||| | | ||| || || | Sbjct 733443 TTCTTTGTCCTGGAT-TTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTCGACTTCGA 733385 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 733384 GCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTG 733345 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | |||||| || || |||||||| | ||| ||||| | | ||| Sbjct 733790 CGAAGTCGCAAAACCAAGTGGAGCGTGGATTCCTTTTGAATGTTATAGTCCGAAAGAGTT 733731 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||||||||| || || |||||||| || ||||| ||||| || ||| ||| ||| Sbjct 733730 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGTTGCTGATCAGGAGGAATACCT 733671 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || ||| || || ||| ||||| ||||| | | ||| || || | Sbjct 733670 TCTTTGTCCTGGAT-TTTGGCTTTTACGTTTTCGATCGTGTCGGAAGCTTCGACTTCGAG 733612 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| |||||||| || || || Sbjct 733611 TGTGATGGTTTTGCCTGTGAGTGTTTTCACGAAGATCTG 733573 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | ||||| || || |||||||||| ||| || || | | ||| Sbjct 733335 TCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAAAGAGT 733276 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || ||||||| || || || |||||||| ||||||||||| || ||| ||| || Sbjct 733275 TCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCC 733216 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| || || ||| | ||||| | | ||| || || | Sbjct 733215 CTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACCTCAAG 733156 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || |||||||| ||||| Sbjct 733155 GGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTG 733117 >seq3008 Length=1134530 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| |||| || | || ||||| || || ||||| | ||||| || | | || Sbjct 387864 CGAAGCCTCAAAACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAATCTGAGAGCGTT 387923 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || |||||||| ||||| | |||||| || |||||| |||||| Sbjct 387924 CGACCATCTTCGAGTTGTTTTCCGGCAAAGATCAAACGCTGTTGATCCGGAGGGATTCCT 387983 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| ||| ||| ||| |||| ||||||| || || || || || Sbjct 387984 TCCTTGTCCTGAATTTTTGCCTTGACGTTCTCGATTGTGTCTGATGCCTCGACTTCTAAA 388043 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||||||||||||||| Sbjct 388044 GTGATGGTTTTTCCTGTAAGAGTTTTCACAAAAATTTG 388081 >seq2856 Length=4748033 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||||| || || || | | ||| | |||||||||||||||||| || |||||||| Sbjct 1621061 TTTTGGATATTATAATCTGAAAGAGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAGATA 1621002 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 || |||||||| || || |||||| ||| ||||| ||||| || || ||| Sbjct 1621001 AGTCGCTGCTGATCAGGTGGAATTCCCTCTTTATCCTGTATCTTGGCTTTTACATTTTCT 1620942 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | || || | | |||||| || | || || |||||||||||||| ||||| || ||| Sbjct 1620941 ATAGTATCCGACGATTCTACCTCGAGGGTAATAGTCTTACCCGTGAGGGTTTTTACGAAA 1620882 Query 199622 ATTTG 199626 || || Sbjct 1620881 ATCTG 1620877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178875832053010