Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2987 107 2e-18
seq3008 104 3e-17
>seq2987
Length=818656
Score = 107 bits (118), Expect = 2e-18
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||||| ||||| || | ||| |||||||| || || ||||| ||
Sbjct 733568 CCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTGAA 733509
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| | | || || || || ||||||||||| |||| |||||||| || | ||
Sbjct 733508 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGGAGGA 733449
Query 46487 ACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || |||||| ||| || ||| | | ||| | |||||| | ||| |
Sbjct 733448 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCG--ATCGTGTCAGAAGCTTCGA 733391
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
| || | ||||||||| |||||||| || || || |||||||||||||||
Sbjct 733390 CTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCATT 733341
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | |||||| |||| ||| | ||| ||||||||||| || || || ||
Sbjct 733340 CCTCCTCGAAGACGCAAAACCAAATGGAGTGTGGATTCCTTTTGGATGTTATAATCTGAA 733281
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| | |||| || | || || || ||||| |||| |||||||| || | ||
Sbjct 733280 AGAGTTCTGCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 733221
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||| || || |||||| |||| | | | ||||| | ||||||
Sbjct 733220 ATGCCCTCTTTATCTTGGATCTTGGCTTTGACATTTTCTATAGTGTCAGAAGCTTCCACC 733161
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||| ||||| || || || || || ||||||||||||||
Sbjct 733160 TCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 733114
Score = 86.0 bits (94), Expect = 7e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|||||||| || || ||||| || ||||| | | || || || || |||||||||||
Sbjct 733760 TCCTTTTGAATGTTATAGTCCGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAA 733701
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| || ||||| || | || | | || |||||| ||| || || | |
Sbjct 733700 ATCAGACGTTGCTGATCAGGAGGAATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTT 733641
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||||| | ||| || || | |||||||||||||| || || ||||| ||
Sbjct 733640 TCGATCGTGTCGGAAGCTTCGACTTCGAGTGTGATGGTTTTGCCTGTGAGTGTTTTCACG 733581
Query 46583 AAGATTTGCATT 46594
||||| ||||||
Sbjct 733580 AAGATCTGCATT 733569
>seq3008
Length=1134530
Score = 104 bits (114), Expect = 3e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 46382 AACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCG 46441
|| ||||||||||| || |||||||||||||| || || || | ||||||| ||||
Sbjct 387642 AAAACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCT 387701
Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501
|| || ||||| || || || ||||| |||||||| || | || | | ||| || ||
Sbjct 387702 TCCAGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCT 387761
Query 46502 ATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561
||||| || | || | | || || || || || |||| ||||||||||
Sbjct 387762 TGAATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTT 387821
Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || |||||||| || || |||||
Sbjct 387822 TTACCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 86.0 bits (94), Expect = 7e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| |||||| ||| ||||| ||||||||||| || || | |||||| | || ||
Sbjct 388332 ACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCTTCA 388391
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| || || || || || ||||| | |||||| || | || | || || |||||
Sbjct 388392 AGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCTTGA 388451
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|| || ||| | || | | ||||| | ||| || |||| ||| ||||| ||
Sbjct 388452 ATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTCTTT 388511
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| |||| |||||||| || || ||||||
Sbjct 388512 CCTGTCAAGGTTTTAACGAAAATCTGCATT 388541
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|| ||||| |||||||| || || || || || | || ||||| || || ||||| ||
Sbjct 387894 TCTTTTTGAATATTGTAATCTGAGAGCGTTCGACCATCTTCGAGTTGTTTTCCGGCAAAG 387953
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||| || || | || | | ||||||||| || || ||||| ||
Sbjct 387954 ATCAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTC 388013
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| | || || || | ||||||||||| || || || ||||| |||
Sbjct 388014 TCGATTGTGTCTGATGCCTCGACTTCTAAAGTGATGGTTTTTCCTGTAAGAGTTTTCACA 388073
Query 46583 AAGATTTGCAT 46593
|| ||||||||
Sbjct 388074 AAAATTTGCAT 388084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565216991595600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |