Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3008 131 1e-25 seq2987 86.0 4e-12 seq2838 82.4 5e-11 >seq3008 Length=1134530 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||||||||||||| ||| || || ||||| ||||| | |||| ||| |||| Sbjct 388329 AGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCT 388388 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | |||||| || ||||||| || | ||||||||||| || | |||||||||||| Sbjct 388389 TCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCT 388448 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 |||||| |||| || | | |||||||| ||| || ||||| || || || Sbjct 388449 TGAATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTC 388508 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| ||||| |||||||| Sbjct 388509 TTTCCTGTCAAGGTTTTAACGAAAATCTGCAT 388540 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||||| ||| |||||| || ||||| ||||||| | ||| | || || Sbjct 388104 ACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTCTTCA 388163 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 | ||||| ||| |||| || |||||||||||||||| || | ||| |||||||| Sbjct 388164 AGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTGA 388223 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 |||||| |||| || | | ||| |||| ||| || || || ||||| || || Sbjct 388224 ATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGTCTTT 388283 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| |||||| ||||| |||||||| Sbjct 388284 CCTGTTAGAGTTTTGACGAAAATCTGCAT 388312 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGT 39568 |||||||||| |||| ||||||||| || || ||||||| | | || || |||| | Sbjct 387417 ACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGG--AGAGCGTTCGACCATCTT 387474 Query 39569 CCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGC 39628 | | |||||| || |||| || |||||||||||||||| || | ||||||||||| Sbjct 387475 CAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTT 387534 Query 39629 ATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTT 39688 ||||| ||| | || | | || |||| || || || || || || |||| Sbjct 387535 GAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGTTT 387594 Query 39689 TACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || |||| |||||| ||||| |||||||| Sbjct 387595 TCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||| |||||||||| ||| ||||| ||||||||||| | |||| ||| | || ||| Sbjct 387645 ACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCTTCC 387704 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 | ||| || || ||||||| |||||||||||||| | || | || ||||| || Sbjct 387705 AGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCTTGA 387764 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || || ||| | || | | || || | || || |||| || || |||||| Sbjct 387765 ATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTTTTA 387824 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | |||||| ||||| |||||||| Sbjct 387825 CCGGTAAGAGTTTTAACGAAAATCTGCAT 387853 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || |||||||||||||| ||| || || || || ||||||| |||| ||| |||| Sbjct 388557 AGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCT 388616 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | ||||| ||| ||||||| |||||||||||||| | || | || ||||| || Sbjct 388617 TCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCT 388676 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 ||||| ||| | || | | || || | ||| || || | ||| || ||| Sbjct 388677 TGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTT 388736 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || || || ||||||||||| Sbjct 388737 TTCCCAGTCAATGTCTTCACAAAGATCTGCAT 388768 >seq2987 Length=818656 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||||||||| || | ||| ||| ||||| || ||||| || | Sbjct 733568 CCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTG-- 733511 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| |||| |||||| ||| | ||||| | |||||||||||| | Sbjct 733510 --AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGG 733453 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | ||||||||||| ||||| ||| | | | | ||||| | ||| Sbjct 733452 AGGAATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTC 733393 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || || || ||||| | ||| ||||| ||||| ||||| Sbjct 733392 GACTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342 >seq2838 Length=268038 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||||||| |||| || || || || || ||| ||||||||||||||||||| | Sbjct 122094 CCTCCTCGCAAGCGCAACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGAC 122035 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 ||| | |||| || |||||||| || |||| || || ||||||||||| Sbjct 122034 AAAGTCCTACCATCTTCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATC 121982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347356772291990