Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq3008 131 1e-25
seq2987 86.0 4e-12
seq2838 82.4 5e-11
>seq3008
Length=1134530
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| |||||||||||||| ||| || || ||||| ||||| | |||| ||| ||||
Sbjct 388329 AGAACCAAATGCAAAGTAGATTCCTTCTGGATATTGTAATCAGACAAAGTGCGACCATCT 388388
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
|| | |||||| || ||||||| || | ||||||||||| || | ||||||||||||
Sbjct 388389 TCAAGTTGTTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTGTCT 388448
Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687
|||||| |||| || | | |||||||| ||| || ||||| || || ||
Sbjct 388449 TGAATTTTTGCCTTAACATTCTCGATTGTGTCTGATGCTTCAACTTCCAACGTTATGGTC 388508
Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || || ||||| ||||| ||||||||
Sbjct 388509 TTTCCTGTCAAGGTTTTAACGAAAATCTGCAT 388540
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570
|| ||||||| ||| |||||| || ||||| ||||||| | ||| | || ||
Sbjct 388104 ACTAAATGCAGAGTAGATTCTTTCTGAATATTGTAATCGGAAAGTGTGCGGCCGTCTTCA 388163
Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630
| ||||| ||| |||| || |||||||||||||||| || | ||| ||||||||
Sbjct 388164 AGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGGATGCCCTCTTTGTCTTGA 388223
Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690
|||||| |||| || | | ||| |||| ||| || || || ||||| || ||
Sbjct 388224 ATTTTTGCCTTAACGTTCTCAATTGTATCTGATGCTTCGACTTCTAACGTAATGGTCTTT 388283
Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||| |||||| ||||| ||||||||
Sbjct 388284 CCTGTTAGAGTTTTGACGAAAATCTGCAT 388312
Score = 109 bits (120), Expect = 4e-19
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGT 39568
|||||||||| |||| ||||||||| || || ||||||| | | || || |||| |
Sbjct 387417 ACCAAATGCAGAGTGGATTCTTTTTGAATGTTGTAATCGG--AGAGCGTTCGACCATCTT 387474
Query 39569 CCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGC 39628
| | |||||| || |||| || |||||||||||||||| || | |||||||||||
Sbjct 387475 CAAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTT 387534
Query 39629 ATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTT 39688
||||| ||| | || | | || |||| || || || || || || ||||
Sbjct 387535 GAATTTTAGCTTTGACATTCTCGATAGTATCTGATGCCTCAACTTCTAACGTGATGGTTT 387594
Query 39689 TACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || |||| |||||| ||||| ||||||||
Sbjct 387595 TCCCTGTTAGAGTTTTGACGAAAATCTGCAT 387625
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570
|||| |||||||||| ||| ||||| ||||||||||| | |||| ||| | || |||
Sbjct 387645 ACCAGATGCAAAGTGGATTCCTTTTGGATATTATAATCAGACAAAGTGCGCCCGTCTTCC 387704
Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630
| ||| || || ||||||| |||||||||||||| | || | || ||||| ||
Sbjct 387705 AGTTGCTTTCCAGCAAAAATCAAACGCTGCTGATCAGGTGGGATACCCTCTTTATCTTGA 387764
Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690
|| || ||| | || | | || || | || || |||| || || ||||||
Sbjct 387765 ATCTTGGCTTTTACATTCTCAATAGTATCAGAAGACTCGACTTCCAGCGTGATGGTTTTA 387824
Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || | |||||| ||||| ||||||||
Sbjct 387825 CCGGTAAGAGTTTTAACGAAAATCTGCAT 387853
Score = 98.7 bits (108), Expect = 7e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| |||||||||||||| ||| || || || || ||||||| |||| ||| ||||
Sbjct 388557 AGAACCAAATGCAAAGTAGATTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCATCT 388616
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
|| | ||||| ||| ||||||| |||||||||||||| | || | || ||||| ||
Sbjct 388617 TCAAGCTGTTTTCCGGCAAAAATCAAACGCTGCTGATCGGGTGGAATACCCTCTTTATCT 388676
Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687
||||| ||| | || | | || || | ||| || || | ||| || |||
Sbjct 388677 TGAATTTTGGCTTTTACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATAGTT 388736
Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || || || || || |||||||||||
Sbjct 388737 TTCCCAGTCAATGTCTTCACAAAGATCTGCAT 388768
>seq2987
Length=818656
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/231 (68%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| ||||| | ||||||||||| || | ||| ||| ||||| || ||||| || |
Sbjct 733568 CCTCCTCGAAGACGCAGTACCAGGTGAAGTGTGGATTCCTTTTGAATGTTATAGTCTG-- 733511
Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608
|| | |||| ||| |||| |||||| ||| | ||||| | |||||||||||| |
Sbjct 733510 --AAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGCTGATCAGG 733453
Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668
|| | ||||||||||| ||||| ||| | | | | ||||| | |||
Sbjct 733452 AGGAATACCTTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTGTCAGAAGCTTC 733393
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || | || || || || ||||| | ||| ||||| ||||| |||||
Sbjct 733392 GACTTCGAGCGTGATGGTCTTGCCCGTAAGAGTCTTTACAAAGATTTGCAT 733342
>seq2838
Length=268038
Score = 82.4 bits (90), Expect = 5e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||||||| |||| || || || || || ||| ||||||||||||||||||| |
Sbjct 122094 CCTCCTCGCAAGCGCAACACTAAGTGTAACGTAGATTCCTTTTGTATATTATAATCGGAC 122035
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605
||| | |||| || |||||||| || |||| || || |||||||||||
Sbjct 122034 AAAGTCCTACCATCTTCTAATTGTTTGCCAGCAAAGATCAATCGCTGCTGATC 121982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347356772291990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |