Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2987 141 9e-29 seq3008 100 3e-16 seq2856 87.8 2e-12 >seq2987 Length=818656 Score = 141 bits (156), Expect = 9e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| ||||| |||||||||||||| |||| ||||| || | Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | ||||| | |||| ||||||| |||||||| || ||||| | || | Sbjct 733629 CGACACGATCGAAAACG-TAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATC 733687 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || |||| ||| |||||||| ||||| || | | || || ||||| | Sbjct 733688 AGCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATA 733747 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| ||||||||| | ||||| || ||||| |||| Sbjct 733748 ACATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCG 733784 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || ||||| |||||| | || || || || | Sbjct 733114 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCT 733173 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| || |||| || |||||||| ||||| | || || Sbjct 733174 GACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCAG 733233 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || ||||| |||| |||| | || || || || ||| Sbjct 733234 CAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTATAAC 733293 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || |||||||| ||||| | |||| || Sbjct 733294 ATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGG 733340 >seq3008 Length=1134530 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| || || || ||||||||||| | || || ||||| | Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | |||| ||||| | |||||||| ||||| || | || || Sbjct 387566 AGATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCA 387507 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || ||||| || || || | || || ||| ||| ||||| Sbjct 387506 GCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAA 387447 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||| ||||| ||| | || ||||||||||| Sbjct 387446 CATTCAAAAAGAATCCACTCTGCATTTGGT 387417 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || || ||||||||||| | || |||||||| | Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | |||||| | ||||| || ||||| || | || || Sbjct 388024 GACACAATCGAGAACG-TCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCA 387966 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || || ||||| || || || | || || ||| || ||||| Sbjct 387965 ACAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAA 387906 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 || ||||| ||| | || || ||||| || Sbjct 387905 TATTCAAAAAGAATCCACTCTTCATTTAGT 387876 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || || ||||| || | || ||||| || | Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| |||| | |||||| | ||||||||||| || || | || || Sbjct 388252 GATACAATTGAGAACG-TTAAGGCAAAAATTCAAGACAAAGAGGGCATCCCTCCGGATCA 388194 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || |||||||| || |||| ||||| || ||| ||||| Sbjct 388193 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAA 388134 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 || || || ||| | || |||||||| || Sbjct 388133 TATTCAGAAAGAATCTACTCTGCATTTAGT 388104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || ||||||||||| | || |||||| | | Sbjct 387853 ATGCAGATTTTCGTTAAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCT 387794 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || || | || |||||||| || || | || || Sbjct 387793 GATACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAG 387734 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| || || || || ||||| |||| |||||| | || || || Sbjct 387733 CAGCGTTTGATTTTTGCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATAAT 387674 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||||| | || ||||| |||| Sbjct 387673 ATCCAAAAGGAATCCACTTTGCATCTGGT 387645 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 |||| ||||| | || |||||||| ||||| |||| || ||||| | |||| || Sbjct 388690 AAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCCGATCAGCAGCGTTTGATTTTTGCC 388631 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || |||||||| || || | ||||| | ||| ||||||||||| |||||| | || Sbjct 388630 GGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGATTACAACATCCAGAAGGAATCTACT 388571 Query 38442 CTGCATTTGGTGCT 38455 |||||||||| || Sbjct 388570 TTGCATTTGGTTCT 388557 >seq2856 Length=4748033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||||||||| |||||||| || || || ||| |||| || || | | Sbjct 1620874 ATGCAGATTTTCGTAAAAACCCTCACGGGTAAGACTATTACCCTCGAGGTAGAATCGTCG 1620933 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| || || | || |||||||||||||| | || || Sbjct 1620934 GATACTATAGAAAATGTAAAAGCCAAGATACAGGATAAAGAGGGAATTCCACCTGATCAG 1620993 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | || || || || || || Sbjct 1620994 CAGCGACTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGTACTCTTTCAGATTATAAT 1621053 Query 38424 ATCCAAAA 38431 |||||||| Sbjct 1621054 ATCCAAAA 1621061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500153855955200