Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10]
3,030 sequences; 219,500,750 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2987 141 9e-29
seq3008 100 3e-16
seq2856 87.8 2e-12
>seq2987
Length=818656
Score = 141 bits (156), Expect = 9e-29
Identities = 163/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||| ||||| ||||| |||||||||||||| |||| ||||| || |
Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628
Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
||||| | | ||||| | |||| ||||||| |||||||| || ||||| | || |
Sbjct 733629 CGACACGATCGAAAACG-TAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATC 733687
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || || || |||| ||| |||||||| ||||| || | | || || ||||| |
Sbjct 733688 AGCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATA 733747
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||| ||||||||| | ||||| || ||||| ||||
Sbjct 733748 ACATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCG 733784
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || ||||| || ||||| |||||| | || || || || |
Sbjct 733114 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAGCTTCT 733173
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | ||| | |||| || |||| || |||||||| ||||| | || ||
Sbjct 733174 GACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTCCTCCTGATCAG 733233
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| || ||||| |||| |||| | || || || || |||
Sbjct 733234 CAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTTCAGATTATAAC 733293
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||||||| | || || |||||||| ||||| | |||| ||
Sbjct 733294 ATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGG 733340
>seq3008
Length=1134530
Score = 100 bits (110), Expect = 3e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||| ||||| || || || ||||||||||| | || || ||||| |
Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | | |||| ||||| | |||||||| ||||| || | || ||
Sbjct 387566 AGATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCA 387507
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | || || ||||| || || || | || || ||| ||| |||||
Sbjct 387506 GCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAA 387447
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452
||| ||||| ||| | || |||||||||||
Sbjct 387446 CATTCAAAAAGAATCCACTCTGCATTTGGT 387417
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || ||||| || || || ||||||||||| | || |||||||| |
Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | |||||| | ||||| || ||||| || | || ||
Sbjct 388024 GACACAATCGAGAACG-TCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCA 387966
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| | || | || || ||||| || || || | || || ||| || |||||
Sbjct 387965 ACAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAA 387906
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452
|| ||||| ||| | || || ||||| ||
Sbjct 387905 TATTCAAAAAGAATCCACTCTTCATTTAGT 387876
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| || || || || ||||| || | || ||||| || |
Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | |||| |||| | |||||| | ||||||||||| || || | || ||
Sbjct 388252 GATACAATTGAGAACG-TTAAGGCAAAAATTCAAGACAAAGAGGGCATCCCTCCGGATCA 388194
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | || || |||||||| || |||| ||||| || ||| |||||
Sbjct 388193 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAA 388134
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452
|| || || ||| | || |||||||| ||
Sbjct 388133 TATTCAGAAAGAATCTACTCTGCATTTAGT 388104
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| || || || ||||||||||| | || |||||| | |
Sbjct 387853 ATGCAGATTTTCGTTAAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCT 387794
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | |||| || || | || |||||||| || || | || ||
Sbjct 387793 GATACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAG 387734
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| || || || || ||||| |||| |||||| | || || ||
Sbjct 387733 CAGCGTTTGATTTTTGCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATAAT 387674
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGT 38452
|||||||||||| | || ||||| ||||
Sbjct 387673 ATCCAAAAGGAATCCACTTTGCATCTGGT 387645
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381
|||| ||||| | || |||||||| ||||| |||| || ||||| | |||| ||
Sbjct 388690 AAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCCGATCAGCAGCGTTTGATTTTTGCC 388631
Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441
|| |||||||| || || | ||||| | ||| ||||||||||| |||||| | ||
Sbjct 388630 GGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGATTACAACATCCAGAAGGAATCTACT 388571
Query 38442 CTGCATTTGGTGCT 38455
|||||||||| ||
Sbjct 388570 TTGCATTTGGTTCT 388557
>seq2856
Length=4748033
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||||||||| |||||||| || || || ||| |||| || || | |
Sbjct 1620874 ATGCAGATTTTCGTAAAAACCCTCACGGGTAAGACTATTACCCTCGAGGTAGAATCGTCG 1620933
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | ||| | |||| || || | || |||||||||||||| | || ||
Sbjct 1620934 GATACTATAGAAAATGTAAAAGCCAAGATACAGGATAAAGAGGGAATTCCACCTGATCAG 1620993
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| |||||||| || | || || || || || ||
Sbjct 1620994 CAGCGACTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGTACTCTTTCAGATTATAAT 1621053
Query 38424 ATCCAAAA 38431
||||||||
Sbjct 1621054 ATCCAAAA 1621061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500153855955200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |