Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3008 145 3e-29 seq2987 138 4e-27 seq2927 131 7e-25 seq2953 122 3e-22 seq2856 116 1e-20 >seq3008 Length=1134530 Score = 145 bits (160), Expect = 3e-29 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || ||| ||||||| |||||||| |||||||| |||||| | || Sbjct 388769 AATGCAGATCTTTGTGAAGACATTGACTGGGAAAACTATAACTCTTGAAGTTGAAGCTTC 388710 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| |||||||||||||| || || ||||| || ||||| Sbjct 388709 TGATACTATTGAGAATGTAAAAGCCAAAATTCAAGATAAAGAGGGTATTCCACCCGATCA 388650 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||||| ||||| | || ||||| ||||||||||| | |||||| | ||||| || Sbjct 388649 GCAGCGTTTGATTTTTGCCGGAAAACAGCTTGAAGATGGTCGCACTTTGTCCGATTACAA 388590 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTG 391268 || | ||||| | || | || || || | |||||| Sbjct 388589 CATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTG 388550 Score = 132 bits (146), Expect = 2e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||||||||| || || |||||||| || || || || || || || ||| Sbjct 387853 ATGCAGATTTTCGTTAAAACTCTTACCGGTAAAACCATCACGCTGGAAGTCGAGTCTTCT 387794 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | ||| || ||||||||||| || || || || |||||||| Sbjct 387793 GATACTATTGAGAATGTAAAAGCCAAGATTCAAGATAAAGAGGGTATCCCACCTGATCAG 387734 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| ||||| | || || ||||| ||||| || | |||||| | ||||||||| Sbjct 387733 CAGCGTTTGATTTTTGCTGGAAAGCAACTGGAAGACGGGCGCACTTTGTCTGATTATAAT 387674 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 387673 ATCCAAAAGGA 387663 Score = 127 bits (140), Expect = 8e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||||||||| |||| || || || || || | || |||||| |||| Sbjct 388541 AATGCAGATTTTCGTTAAAACCTTGACAGGAAAGACCATAACGTTGGAAGTTGAAGCATC 388482 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | |||| |||||||||||| || ||||| || ||||| ||||| Sbjct 388481 AGACACAATCGAGAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCA 388422 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || ||||| | || ||||||||||||||||| | |||||| | ||||| || Sbjct 388421 GCAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTTTGTCTGATTACAA 388362 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTG 391268 ||| | ||||| | || | || || || | |||||| Sbjct 388361 TATCCAGAAGGAATCTACTTTGCATTTGGTTCTCAGACTG 388322 Score = 123 bits (136), Expect = 1e-22 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| | || || || || ||||| | || || || | ||| Sbjct 387397 ATGCAGATTTTCGTCAAAACTTTAACAGGAAAGACGATTACATTGGAAGTCGAGGCTTCT 387338 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || ||| ||||||||||| || || ||||||||||||||| Sbjct 387337 GATACCATTGAGAACGTGAAGGCAAAGATTCAAGATAAAGAGGGCATTCCTCCTGATCAA 387278 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | ||||| |||| || ||||| || |||||| | ||||| | || || ||| Sbjct 387277 CAAAGACTGATTTTTGCAGGCAAGCAACTCGAGGATGGACGCACTTTATCAGACTACAAT 387218 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | |||||||| Sbjct 387217 ATTCAAAAGGAATCTACACTTCA 387195 Score = 120 bits (132), Expect = 1e-21 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || || || ||||| || || | || ||||| |||| Sbjct 387626 AATGCAGATTTTCGTCAAAACTCTAACAGGGAAAACCATCACGTTAGAAGTTGAGGCATC 387567 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || || | | ||| ||||||||||| || |||||||| ||||| ||||| Sbjct 387566 AGATACTATCGAGAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCA 387507 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||||| || || | || ||||||||||||||||| |||| | | ||||| || Sbjct 387506 GCAGCGTTTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGAACGCTCTCCGATTACAA 387447 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | || || | || || || || || || || || Sbjct 387446 CATTCAAAAAGAATCCACTCTGCATTTGGTTTTGAGGCT 387408 Score = 118 bits (130), Expect = 4e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || ||||| || ||| | || || || |||| Sbjct 388084 ATGCAAATTTTTGTGAAAACTCTTACAGGAAAAACCATCACTTTAGAAGTCGAGGCATCA 388025 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | || ||||||||| || ||||||||||| ||||| |||||| Sbjct 388024 GACACAATCGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAA 387965 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || |||||||| |||||||| |||| | | ||||| ||| Sbjct 387964 CAGCGTTTGATCTTTGCCGGAAAACAACTCGAAGATGGTCGAACGCTCTCAGATTACAAT 387905 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | || || | || ||||| ||||| || || || Sbjct 387904 ATTCAAAAAGAATCCACTCTTCATTTAGTTTTGAGGCT 387867 Score = 109 bits (120), Expect = 2e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || || || ||||| | || || ||| |||| Sbjct 388312 ATGCAGATTTTCGTCAAAACTCTAACAGGAAAGACCATTACGTTAGAAGTCGAAGCATCA 388253 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| |||| |||||||||||| || || || || ||||| ||||| Sbjct 388252 GATACAATTGAGAACGTTAAGGCAAAAATTCAAGACAAAGAGGGCATCCCTCCGGATCAG 388193 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || ||||| |||||||| || | || | | ||||| ||| Sbjct 388192 CAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCCGATTACAAT 388133 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 ||| | || || | || || || ||||| ||| Sbjct 388132 ATTCAGAAAGAATCTACTCTGCATTTAGTTTTA 388100 >seq2987 Length=818656 Score = 138 bits (152), Expect = 4e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| |||||||| || || ||||| || || || || || ||| | || Sbjct 733569 AATGCAGATCTTCGTGAAAACACTCACAGGCAAAACCATCACACTCGAAGTCGAAGCTTC 733628 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || ||| | ||| ||||| || || || ||||| |||||||||||||| Sbjct 733629 CGACACGATCGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733688 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||| | |||||| | || |||||||| |||||||| |||||| | |||| ||||| Sbjct 733689 GCAACGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCGGACTATAA 733748 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || || ||||| || || |||| Sbjct 733749 CATTCAAAAGGAATCCACGCTCCACTTGGTTTTGCGACT 733787 Score = 125 bits (138), Expect = 3e-23 Identities = 175/244 (72%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 391040 TTATATT-ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATG 391098 ||| ||| || ||| | || || || || || || ||||| |||||||| || ||||| | Sbjct 733103 TTAGATTCATCATGCAAATCTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAGG 733162 Query 391099 TTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTC 391158 | ||| | ||||| | || ||| | | ||| || || |||||||| || || |||| Sbjct 733163 TGGAAGCTTCTGACACTATAGAAAATGTCAAAGCCAAGATCCAAGATAAAGAGGGCATTC 733222 Query 391159 CTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGG 391218 |||||||||| || ||| | || ||| | || |||||| | ||||| || |||||| | Sbjct 733223 CTCCTGATCAGCAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGCAGAACTCTTT 733282 Query 391219 CGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAA 391278 | |||||||| || | ||||| | ||||| || || || || | || ||||| || Sbjct 733283 CAGATTATAACATCCAAAAGGAATCCACACTCCATTTGGTTTTGCGTCTTCGAGGAGGAA 733342 Query 391279 TACA 391282 | || Sbjct 733343 TGCA 733346 Score = 125 bits (138), Expect = 3e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || || || || || || || || || || ||| | || Sbjct 733341 AATGCAAATCTTTGTAAAGACTCTTACGGGCAAGACCATCACGCTCGAAGTCGAAGCTTC 733400 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | || ||| | | ||| ||||| || || || ||||| |||||||||||||| Sbjct 733401 TGACACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 733460 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | |||||| | || |||||||| |||||||| |||||| | | || ||||| Sbjct 733461 GCAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCAGACTATAA 733520 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 ||| | ||||| | ||||||||| | ||| | | || ||||| ||| || Sbjct 733521 CATTCAAAAGGAATCCACACTTCACCTGGTACTGCGTCTTCGAGGAGGAATGCA 733574 >seq2927 Length=4912583 Score = 131 bits (144), Expect = 7e-25 Identities = 271/404 (67%), Gaps = 11/404 (3%) Strand=Plus/Plus Query 451216 TTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAA 451275 ||| ||||| || || || ||||| || ||||| | || ||||||||| | || || Sbjct 2841568 TTACAAAGGCGAGACGAAGACTTTCTTCCCCGAAGAGGTGTCCTCTATGGTTTTGACGAA 2841627 Query 451276 AATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 ||||| ||||| || ||| |||| | || | ||||| | || || || ||||| Sbjct 2841628 GATGAAGGAAACGGCGGAAGCATATCTGGGCAAGACTGTTACGAACGCCGTCATCACTGT 2841687 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 || ||||||||||||||| | || ||||||| || || || || || ||| || || Sbjct 2841688 ACCAGCTTATTTCAATGATTCTCAGAGGCAAGCGACGAAGGACGCCGGCGCTATCGCCGG 2841747 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455 ||| |||||||| | || || || || || || |||||||| |||| || || || | Sbjct 2841748 TTTGAATGTTCTCAGGATAATAAACGAGCCGACGGCAGCTGCGATAGCGTACGGTCTCG- 2841806 Query 451456 AAAATCAAAAGAAA----CAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAA 451511 | |||||| ||| || || || | | | || || || |||||||| | Sbjct 2841807 ------ATAAGAAAACTTCAGGCGAGAAGAACGTCCTGATCTTCGACTTGGGTGGAGGTA 2841860 Query 451512 CTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATG 451571 | |||| || | || |||||||||| || | ||||| || || | || | Sbjct 2841861 CCTTTGATGTGTCGATCCTGACAATTGAAGACGGCATCTTTGAGGTGAAATCTACGGCCG 2841920 Query 451572 GTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTG 451615 | || || ||||| || || || || |||| ||| ||| ||| Sbjct 2841921 GCGACACGCATCTCGGCGGAGAGGACTTTGACAATCGAATGGTG 2841964 >seq2953 Length=635362 Score = 122 bits (134), Expect = 3e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || |||| ||||||||||||||||||| || | | || |||| | |||| Sbjct 617326 GTACTTATGAAAATGAAAGAAACAGCAGCGGCTTACTTAAATACTTCAGTGAAAAATGCG 617385 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||||||| || || ||||| || ||| | ||||| ||||| || |||||||| || Sbjct 617386 GTTATTACTGTACCAGCGTATTTTAACGATTCTCAACGACAAGCCACAAAAGATGCTGGG 617445 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || ||| |||| || || || |||||| | ||||| ||||| || |||||||| || ||| Sbjct 617446 CAGATTTCTGGATTGAACGTGCTTCGAGTAATTAACGAACCAACCGCAGCTGCACTTGCA 617505 Query 451445 TATGG 451449 || || Sbjct 617506 TACGG 617510 >seq2856 Length=4748033 Score = 116 bits (128), Expect = 1e-20 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || ||||| |||||||| || || || ||||| || Sbjct 1620874 ATGCAGATTTTCGTAAAAACCCTCACGGGTAAGACTATTACCCTCGAGGTAGAATCGTCG 1620933 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || || || ||||| || |||||||| |||||||| Sbjct 1620934 GATACTATAGAAAATGTAAAAGCCAAGATACAGGATAAAGAGGGAATTCCACCTGATCAG 1620993 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| | || || || || ||||||||| | ||| | | ||||||||| Sbjct 1620994 CAGCGACTTATCTTCGCTGGCAAGCAGCTGGAAGATGGACGTACTCTTTCAGATTATAAT 1621053 Query 391230 AT 391231 || Sbjct 1621054 AT 1621055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975641698907240